RNA id: AMCG00008744


Basic Information

Item Value
RNA id AMCG00008744
length 1479
RNA type mRNA
GC content 0.54
exon number 12
gene id AMCG00008744
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10560866 ~ 10603373 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGCTGTTGCCTTTGGTAACAGAgATTCCTGCAGAAGCCCGGTTGTCATCTGAAGGGCAACTAGAGCAACCGGTACAAACCAACTCCATGGAGCTCGGCATAGGAGTGTCCCGGGAGCAGATCCTGTCGGCGCAGTTCGAGTGCTACATGAAGATCCTGAGTGATCCACCATACCACGGAGAAGGCCCTTACTGTAACCGCACGTGGGACGGCTGGCTGTGCTGGTCAGACTACCCCCCTGGAACAGCCATGCAGCTCTGTCCCACTTACTTCCAGGACTTTGATCCCTCTGAGATGGTGACCAAGGTGTGCAACACAGACGGCCAGTGGTTCCGGCACCCTGAGAGCAACCGGACCTGGTCCAACTACACACTGTGCTCTGCCTACACTGGGCAGAATCTCAAGACAGCATACAGCCACTACTACCTGGCTATAATCGGCCATGGACTGTCAGTGGTGTCTCTACTCATCTCCCTGTGTATCTTCTTCTACTTCAAAAGTTTGAGCTGCCAGAGGATCTCTCTCCACAAGAACCTCTTCCTTTCCTTCATTCTCAACTCCATCCTCActGTCAGCTGCAAGCTGCTGCAGTTCCTCAACCTTTACACCAACAGCTGCAATTACTTCTGGATGCTGTGTGAAGGGATCTACCTGCACACCCTCATCATTGTGGCCGTGTTCGTGGAGGAGCAGAAGCTGTGTTGGTACTACATCCTGGGCTGGGGCTTCCCACTGATTCCTGCCACCATCCATGCTGTGGCCAGACTACTTTTCTACAACGACAAGTGTTGGATCAGTTCAGACACCCACCTCCTGTACATTATCCATGGTCCCATTCACGCTGCTCTGCTGgtGAACTTGTTCTTCCTGTTGAACATCGTCCGTGTCTTGATCACCAAGCTGAAGGTGACTCACAGCGCAGAGTCCAACACCTACATGAAGGCCGTGCGTGCCACTCTCATCCTGGTTCCTCTGCTGGGCATCCAGTTCGTGCTGGTGCCCTGGAGCCCCCAGGGCCGGATGGCACGCAATGTGTATGACTACATCATGCATATCTTCACCCACTACCAGGGAATAGTGGGATTAGTGGGCCGAGCACTGTGTGACATGAATTCGTTCCCCCTCCACCTCGGTTGCGCTGATTCAAGGAGGAAAGTGCAACTGGCAAAACTCTTCCTTAATGCTGCTGTACCCTCTTCCCCCCAGGTGCAAGCCACGCTAAGGAGGCACTGGATGCAGTACAGGGTGCAGAGTACTGGCCGACTGAAAGGGGGCGACTCGCACTCCAACTACCACACCGACTCCTCCATCACCGAGATGACCAGGGTCTCCCACAGCCAGGTCACCACAGACCCCCTGGAAAAAACACAGCCGAAGAACGGGACCCACAACACTACCAATGGCCAGAGCAACGGCAAGCACTGCTCTGTAGTGCAGAGGCCTTTGCTGAAGAAGCCAGAGACCACCGTCATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64025 lncRNA downstream 217701 10338325 ~ 10343165 (-) False AMCG00008741
TU63928 lncRNA downstream 629764 9927245 ~ 9931102 (-) True G51120
TU63909 lncRNA downstream 650066 9909611 ~ 9910800 (-) True G51103
TU63883 lncRNA downstream 821610 9738646 ~ 9739256 (-) True G51081
TU63852 lncRNA downstream 982483 9577268 ~ 9578383 (-) True G51057
TU64116 lncRNA upstream 93810 10668711 ~ 10673855 (-) True G51243
TU64104 lncRNA upstream 100855 10675756 ~ 10712485 (-) False G51241
TU64106 lncRNA upstream 100855 10675756 ~ 10712485 (-) False G51241
TU64107 lncRNA upstream 100855 10675756 ~ 10712485 (-) False G51241
TU64111 lncRNA upstream 100855 10675756 ~ 10712485 (-) False G51241
AMCG00008743 mRNA downstream 71100 10472530 ~ 10489766 (-) True AMCG00008743
AMCG00008741 mRNA downstream 190550 10340167 ~ 10370316 (-) True AMCG00008741
AMCG00008739 mRNA downstream 303015 10221420 ~ 10257851 (-) True AMCG00008739
AMCG00008740 mRNA downstream 367601 10183119 ~ 10193265 (-) True AMCG00008740
AMCG00008734 mRNA downstream 495532 10059303 ~ 10065334 (-) True AMCG00008734
AMCG00008747 mRNA upstream 80110 10655011 ~ 10662191 (-) True AMCG00008747
AMCG00008748 mRNA upstream 96048 10670949 ~ 10678973 (-) False AMCG00008748
AMCG00008750 mRNA upstream 144591 10719492 ~ 10725176 (-) True AMCG00008750
AMCG00008751 mRNA upstream 189115 10764016 ~ 10771654 (-) True AMCG00008751
AMCG00008756 mRNA upstream 383683 10958584 ~ 10972379 (-) True AMCG00008756
TU63794 other downstream 1167639 9390843 ~ 9393227 (-) True G51008
TU63526 other downstream 1900849 8656728 ~ 8660017 (-) True G50788
TU63463 other downstream 2189536 8367916 ~ 8371330 (-) True G50739
TU63429 other downstream 2266512 8270324 ~ 8294354 (-) False G50712
TU64119 other upstream 102362 10677263 ~ 10718201 (-) False AMCG00008748
TU64120 other upstream 102362 10677263 ~ 10700483 (-) True AMCG00008748
TU64105 other upstream 105377 10680278 ~ 10712485 (-) False G51241
TU64108 other upstream 105377 10680278 ~ 10682873 (-) True G51241
TU64128 other upstream 222731 10797632 ~ 10799154 (-) True G51250

Expression Profile