RNA id: AMCG00008745


Basic Information

Item Value
RNA id AMCG00008745
length 2607
RNA type mRNA
GC content 0.42
exon number 6
gene id AMCG00008745
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10611383 ~ 10618165 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCTCTCTTCCTGTATTTAATCCCACAGCTTCTGAGATCTGAAAACTTCAACTTCACTTTAATGACAGAGCCTGAGTTAGGATTAGGGTTTATGTGAGACTTTTGGCTGAGGCTTGGGACGGCCTACAGAAATGAAAAGGAGAGGTTAAGATGACTCCCTTAGAGGATGACGAGATCTATTTCACAGTCAAGATGTCTGAGGGCTCCGTGGCcagcaaactgaaaaacaagcaTCGCAAGACATCTCTGTTTCTGTCCATCAGTGGGATTGACATCCTGGACCACAAAACCAAGTTCATGCTGCACAGCTGCCCTCTGTCCACCATCTCCTTCTGCGCAGTGCACCAGACCATGCCCAACCTCTTTGGCTTCATCTCCAAGGGCTCTGCAGGCAAGGGCCACTACTGCTACCTGTTCAAGAGCACCAAGTTCTCCCATTTGCTGGTGTCCATCATCGGAGAAGCATTCTATGCCGCTAAGGGCCGAGAGGACTTCGGGGGAGACAAGGACCTGATGGTTGAATCCCTGAGACACAAGAATAAGATACTGCAGAAGGAGAACACCATGCTGAAAAAGAAGATTGCCAAGATGGAGGAGAAAATGGATGCCAACAAGGGCTAATTTCACTGGGTGGCTTAAAAAGCAGTGGGATGGGGATAATTTTATGTTTCACAGCCTTCTTAAGCGGATCACTTAAGCACTTAACACAGACCTGTTTGCCATCGCTCAGCTTTGCGGTGTCTGTCTCTTTTGGTTGCACTAGTCACCTATCACAGTCAACAACTGAAGACTCGttgtgggagaaaaaaaagttgtcatGCAATTTAGCATATTGGTTTTGCCCTGAGATGAACTTGAATACTGTTGGTACTGTAAATAGAAAGTGTCCTCGTTCACAACTCCCATCGCATTGTCCCAGTGACTCAGTGACCTGTGACCGATGCCAGTCCCACTCAATCTgaccccctctccctgtctgcTCTCTCCCTATCAGGGAACAGACAGGAGACCTCCAACAGTATTCAGAAACCAAATTGCACCAGAGAGTGTCCCTTCATCCTCCCAAAGCTGAGTAGGGCAAATATATCACACAGGGTGACATGGTGGGTATACAGGTCGAAATAAAGTCCAGTGAAAGTGCATGACAGAGTGCTAGAGTCAGAAATTGCCTATAAATAATTAGTCAAAACTGAATCGAGGACCAATCTGTACCCTGTTGATTTAGTTTATTCCTTAACAAGAAAATGGCCTCTGACAAGAAAGTAATTCAACCAATATGGGAAGcaggtttttttaatttgcattatttggGTAGGgttgatgttttgatttggtccaggcctaaGTATCATTTGAAGTCAGGCTGTACAGCAGATCTAATGAAAAGAGGCCGGAAGGGTGTAATGCCTCTTGTCATTCTAAAGCTTAATTgtgtcatcatcatcaatattgGATCTTCTCATCATCCCAGGAGTGATGAGCAGAACTTCCCAAATAAAGGACAGGGGAAGTTCAGATTCCCATATAGCAATGCCTGACACACAGAGGAATCCACAGCTACCATATTGACAAATCAGTCATGACACTTTCACAGCACGTAGCTGACAATGGGGCTCACTCCCCGAAATgtgaaatcatattttttagGGTTTGAGATTTTGTTATGAGGTTTTATGAGGTTGAGAGATATGTACTTATTAATTTTCATCAAACAAACTGACTTGTGATTGCATGGTTGTTCAAACTGAGGGGTTCACAAAACGTTGTCTATGAAAGGTGGACCCATCCTTGCCTTCTGATcaataaacagattaaaaatacatttgattattttcctcCCTAGAATTAGCATGTCAAGGTGAGAATGATTGAAGACCTCACTCTGAATCGCTGGGCAGAACCAAGACAATCTGCATATGGGTTGTGGTCACTTGACTCACCTACATAGAACCTTTCAATGTATTCTGTACTTCCTCTTTCTTACTGCATTTATGGTGTATTGTATGTTCTTGCTCTTCTTgtgttatatttcttaaaatgtgtatattgtgtgaCAAATAAAGTCGGTAAAGGATTctactattaaataaaataatcataatcaatcCAATATGTTTTCACCCAAAGCAAGAAATCTGAATATTAATCAAGCAAACAATGTCAGAGCTAAAATAGGCTTGATTACTTGATTGCAGTTTCCAGCATAGTGGATTTTTTTTCAGTCTACTAACCTCTTGACTCTTGACCACAATATGTATCCTGATTGGACCTCTGGGCTCCTGTATTCCTGTGAGGCTACTGAGATTGTACTCTCTCCTGCATGCTCAGAGCTCTATACCTGAGATAGCTACACTCTCTTCCAATTGTATTACCCTCTCAATGGCACACCCTTCCAGTCACTAGACTGTAAACTAGTTTTTACTAGTTTACTAGTTAAACTAGGTTTTACActagtttattttataactaCTCTGTTCCCCAGCCTCCTGTCTACAAAGGGCATCCTGAAGAATCCACTATGTAAATGCTGGAGACAGTCCTTTACATCTGCTTAATGTAAATGTCAGGAGgtaatttttaattgtatttgtattttttttttttttt

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64052 lncRNA upstream 41447 10569710 ~ 10569936 (+) True G51212
TU64051 lncRNA upstream 43572 10566737 ~ 10567811 (+) True G51211
TU64050 lncRNA upstream 46443 10564374 ~ 10564940 (+) True G51210
TU64049 lncRNA upstream 48284 10558639 ~ 10563099 (+) True G51209
TU63989 lncRNA upstream 329401 10275181 ~ 10281982 (+) True G51168
TU64079 lncRNA downstream 57400 10675565 ~ 10712485 (+) True G51226
TU64082 lncRNA downstream 57400 10675565 ~ 10712485 (+) False G51226
TU64078 lncRNA downstream 62951 10681116 ~ 10682879 (+) False G51226
TU64080 lncRNA downstream 62951 10681116 ~ 10712485 (+) False G51226
TU64084 lncRNA downstream 62951 10681116 ~ 10682879 (+) False G51226
AMCG00008742 mRNA upstream 299286 10311582 ~ 10312097 (+) True AMCG00008742
AMCG00008737 mRNA upstream 326225 10276950 ~ 10285158 (+) True AMCG00008737
AMCG00008738 mRNA upstream 336172 10258446 ~ 10275211 (+) True AMCG00008738
AMCG00008736 mRNA upstream 392017 10217338 ~ 10219366 (+) True AMCG00008736
AMCG00008727 mRNA upstream 679868 9927387 ~ 9931515 (+) True AMCG00008727
AMCG00008746 mRNA downstream 561 10618726 ~ 10625169 (+) True AMCG00008746
AMCG00008749 mRNA downstream 74370 10692535 ~ 10719316 (+) True AMCG00008749
AMCG00008753 mRNA downstream 179606 10797771 ~ 10803672 (+) True AMCG00008753
AMCG00008752 mRNA downstream 210403 10828568 ~ 10846436 (+) True AMCG00008752
AMCG00008754 mRNA downstream 276877 10895042 ~ 10906610 (+) True AMCG00008754
TU63913 other upstream 680302 9929478 ~ 9931081 (+) False AMCG00008727
TU63914 other upstream 680302 9929478 ~ 9931081 (+) False AMCG00008727
TU63743 other upstream 1295232 9310086 ~ 9316151 (+) False AMCG00008710
TU64057 other downstream 87313 10705478 ~ 10707093 (+) False AMCG00008749
TU64201 other downstream 366725 10984890 ~ 11040674 (+) False G51297
TU64384 other downstream 842198 11460363 ~ 11465488 (+) True G51445
TU64730 other downstream 2097329 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 2224550 12842715 ~ 12846233 (+) True G51756

Expression Profile