RNA id: AMCG00008746


Basic Information

Item Value
RNA id AMCG00008746
length 1093
RNA type mRNA
GC content 0.53
exon number 8
gene id AMCG00008746
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10618726 ~ 10625169 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATCGAGAGGTGAAAAATAAGGGAGAACATCGACAGGAGCGCATCTCCAGCACGGTAGAGaaatacagTGTGCAGCTGTCCCAACCTTGGtaaacagtgctgtgtgtgtgtctgtgcctgaTCTTACAGCGGCAGTGCTTGACTGTCTGGATGGTTGCCAGGCCATGGGTACTCACTGGTCCCAAAGCAACAGGCTAACTCAGTCGGCGCAGAGTATGCGGCAGGGTAGCGATGGCGACGACGACTCCCTGGACGGCCGGGACCGGCAGGAGGACATCGCTCAGTTCCCCTACGTAGAGTTCACGGGCCGGGACAGCATCACGTGTCCCACCTGCCAGGGCACCGGGCGCATTCCCACAGGACAGGTGAATGAGCTGGTTGCCTTAATCCCGTACAGCGATCAGAGGCTACAGCCGCAGAGAACGAAGCTGTATGTGGTTATCTCAGTGGTGGTGTGTCTCCTCGTCTCCTGCCTGGTGGCCTTCTTCCTCTTCCCGCGGTCAGTGCTGGTGGACGACGATGGCATTAAGGAAGTAACTGTGCACTTTGACCGGAACAACACCAAGGTCCTGATGAACATGACGAGCACTCTCAACTTCAGCAACTCCAACTTCTTCACTGTGTCGGTGGACAGCGTGAGCAGCCAGGTGCTGTACATGAAGACTGTGATTGGGACCCAGCAGCTGGACAATGTGCTGCATATACAGCCGCTCAGTACCAAACAGGTGAACTTTACTGTCTCAATGGAGATCAGTGGCACCCTCTCGTATGTCTACACATTTTGCACCATGGAGAGCATCAAGGTCCACAACATCGTGGTGTTCATGCAGACGTCCGTGAAGACCTCCTACATAGTTCGCACTGCCCAGAACACACTGGAGGCCTACCGCTACATTGACTGTGGCTCCAACTCCACTATGCCCAGAAAACCCCCATTCCCCCTGTAGTGGACCAGGCTTCGATACCCCCAAGCCCTCCCTCGCCCCGCTCCCTTCACAGTTTTGTTGGGACATGAAGAGTGGTGgcattaaccttttttttttttttttttttttttttatgtttgaatttTCAAAAGtctgttgttttctct

Function

GO: NA

KEGG:

id description
K25050 TMEM106C; transmembrane protein 106C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64052 lncRNA upstream 48790 10569710 ~ 10569936 (+) True G51212
TU64051 lncRNA upstream 50915 10566737 ~ 10567811 (+) True G51211
TU64050 lncRNA upstream 53786 10564374 ~ 10564940 (+) True G51210
TU64049 lncRNA upstream 55627 10558639 ~ 10563099 (+) True G51209
TU63989 lncRNA upstream 336744 10275181 ~ 10281982 (+) True G51168
TU64079 lncRNA downstream 50396 10675565 ~ 10712485 (+) True G51226
TU64082 lncRNA downstream 50396 10675565 ~ 10712485 (+) False G51226
TU64078 lncRNA downstream 55947 10681116 ~ 10682879 (+) False G51226
TU64080 lncRNA downstream 55947 10681116 ~ 10712485 (+) False G51226
TU64084 lncRNA downstream 55947 10681116 ~ 10682879 (+) False G51226
AMCG00008745 mRNA upstream 561 10611383 ~ 10618165 (+) True AMCG00008745
AMCG00008742 mRNA upstream 306629 10311582 ~ 10312097 (+) True AMCG00008742
AMCG00008737 mRNA upstream 333568 10276950 ~ 10285158 (+) True AMCG00008737
AMCG00008738 mRNA upstream 343515 10258446 ~ 10275211 (+) True AMCG00008738
AMCG00008736 mRNA upstream 399360 10217338 ~ 10219366 (+) True AMCG00008736
AMCG00008749 mRNA downstream 67366 10692535 ~ 10719316 (+) True AMCG00008749
AMCG00008753 mRNA downstream 172602 10797771 ~ 10803672 (+) True AMCG00008753
AMCG00008752 mRNA downstream 203399 10828568 ~ 10846436 (+) True AMCG00008752
AMCG00008754 mRNA downstream 269873 10895042 ~ 10906610 (+) True AMCG00008754
AMCG00008755 mRNA downstream 285958 10911127 ~ 10929774 (+) True AMCG00008755
TU63913 other upstream 687645 9929478 ~ 9931081 (+) False AMCG00008727
TU63914 other upstream 687645 9929478 ~ 9931081 (+) False AMCG00008727
TU63743 other upstream 1302575 9310086 ~ 9316151 (+) False AMCG00008710
TU64057 other downstream 80309 10705478 ~ 10707093 (+) False AMCG00008749
TU64201 other downstream 359721 10984890 ~ 11040674 (+) False G51297
TU64384 other downstream 835194 11460363 ~ 11465488 (+) True G51445
TU64730 other downstream 2090325 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 2217546 12842715 ~ 12846233 (+) True G51756

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050823 False 2315 mRNA 0.44 8 NC_007114.7 1323732 ~ 1339220 (-)