RNA id: AMCG00008747


Basic Information

Item Value
RNA id AMCG00008747
length 2470
RNA type mRNA
GC content 0.48
exon number 9
gene id AMCG00008747
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10655011 ~ 10662191 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTACAACCAGTTCTTCCACATGACATGCACACCTTCACTGCCATACTCACCTGCCCTGCCCCACTGTACCACTGGATAAAAGCACAGTGAACAGCTGATAGCTTCTTCACAGGGTCAGCCTCGCTATCCTCCTTCACAGCCTGGGTTGCAGCTCCTCTTCTCTCGCTCTCAAGAGTCTCTCCTAGTTGACTTGTTGTCAGTACCAGCAACAAAACCAAGGCCAACATGAGCTTCCAAACTAAGAgagtcagcaccagcagccgGAGCATGAGGAGTTCGTCGGGGATGTCCAGTCAGTCCTACTCGGGCTACGGCCGGGAAGCGGCCATCAGCACCCCCATCACGAGCGTCACGGCCAACAAGAGCCTGCTGACCCCCCTCAACCTGACGATCGACCCCAACATCCAGGTGGTCCGCACCCAGGAGAAGGACCAGATCAAGACTCTCAACAACCGCTTCGCCTCCTTCATCGACAAGGTGCGCTACCTGGAGCAGCAGAACAAGATGCTGGAGACCAAGTGGAGTCTTTTGGAAGGCCAGAGCATCAGCAAGTCCAACATTGAGCCCATGTTCGACCAGTACCTCTCCAGCCTGCGCCGTCAGCTTGACATCATCACCAATGACAAGAGCAAGCTGAATGGGGAACTGACGAACATGCAGGCAATGGTGGAGGACTTCAAGCACAAGTACGAAGAAGAAATCCACAAGCGCACTGGCCTGGAAAACGACTTCGTTGTCCTGAAGAAGGATGTTGACACAGCCTACATGATGAAAGCTGAGCTGGAGGAAAAAGTGTACTCCCTCACTGATGAGATCAACTTCCTGAGGAGGATCTATGAGGAGATGGACAACTCTCGCAACCTCGACATGGACCAGATTGTGGCTGAAGTCAAGGCTCAGTATGAGGAGATCGCTGCCAAGAGCCGCCAGGAGGCTGAGTCTTGGTACAAGACCAAGtttgaCCAGATGTCTGCCCAGGCCACCCAATACGGAGACGAGCTCCACAACACCAAGTCGGAGATCGCTGACCTGAAACGTTCAATCAGCCGGCTGCAGAACGAGATCGAGAGCGTCAAGAGCCAGCGCAACAGCCTGGAGGTCGAGATCCGAGAAGCCGAGAAGAATGGTGAGAAGGCAGTGAAGGATGCCAGAGCCAAGATCAAGGACCTGGAGGACGCCCTGCAGCAGGCCAAGCAGGCCATGGCGCGCCAGGTCCGAGAGTACCAGGAGCTGATGAACGTCAAACTGGCCCTGGACATTGAGATCGCCACCTACAGGAAGCTCCTGGAAGGGGAGGAGATCAGgcTTACACAGCAATCTGTGATCAATGTCCACACTATGCCTAGCTACAACTCCCAGCGGGTGATGACTGACTACGCCAGTGGTGCCAGCAGCAGCTCTTCATCCAGGGTGCTGATCAAGATGACCGAGGTCCGTGACAACAGCAGACTAAGCTCCCGCTAAGACAAAGCTCAGAGGACCACAAAGCCCAGCGACCATTTCTGCCCCTCTTATCGCTATCACCTCCTTGGCGATTCTCCAGTTCTTAATTCTGCTTCCGTCTCTTCCTTGGAATGAGTTGATTGCCTTTGTCTTGCTTCACTTGCATCCTGCACTGTGTCCATTTTGGAGGAAGAGGTCTTATGCTGTAGTCATGTGCAGATTACTCTTGACTTTCCATTGTgttctttatttgatttgatttttgcaGAATGTTATTGTCAAAGTAAAAAAGagcaatacagaaataaatattgccttcatgtaaaaaacaaacaaaaggaagacTTACAGGGATTGTTTGCCCTGGATATATTTAAAGGGATTGTTTGCCTACATTCTAATTGTACAATGAAGAAATTATACTTAATTTGTTCAAAATTAGACTAcccagttttaaaacaaaactaaagaatggaaatgtacattttctgtcacAGCCTACAAAACATATTCCTCTCAAATGAAGATGCAGATGCAGAccagaataagaaaataatcaaaaactcACAGCCTGCTGAAGGCCAACagcatgtaatttgtttttcaagacTATTGGTAGCATGGGAAAAATACACTAGGTGCAATGGAAATCTTGCTCTCTGACTGGTCTGAGAAGGGTAAGGCAGCAGTGGGGCAATCTcaacagccaaagccacactgacacacaattgttgttttcagtttatgtTGGTACCACCTGCATTATATAGTTGCTAACCCAGCAATTACCAGGCAGTCCCATAGCAGGGCTTGCAAGTGGAGGCCTGAAACAAAAGCAGAGGCATAcattaatgaaagaaaacaaattaaagtcaTGCTATAAGAAAGTGTCCATGTTGCTCTAATAGTGAaatctgtctgtccctctcatACCAACACTGCCTGATAACACCTGGTTCACCCATTTTCAGTCTGGAAAGGAGCAtgtaaatatctttaaatgtgcCAATAAAAAAAGTCCTCTAA

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64025 lncRNA downstream 311846 10338325 ~ 10343165 (-) False AMCG00008741
TU63928 lncRNA downstream 723909 9927245 ~ 9931102 (-) True G51120
TU63909 lncRNA downstream 744211 9909611 ~ 9910800 (-) True G51103
TU63883 lncRNA downstream 915755 9738646 ~ 9739256 (-) True G51081
TU63852 lncRNA downstream 1076628 9577268 ~ 9578383 (-) True G51057
TU64116 lncRNA upstream 6520 10668711 ~ 10673855 (-) True G51243
TU64104 lncRNA upstream 13565 10675756 ~ 10712485 (-) False G51241
TU64106 lncRNA upstream 13565 10675756 ~ 10712485 (-) False G51241
TU64107 lncRNA upstream 13565 10675756 ~ 10712485 (-) False G51241
TU64111 lncRNA upstream 13565 10675756 ~ 10712485 (-) False G51241
AMCG00008744 mRNA downstream 80110 10560866 ~ 10574901 (-) True AMCG00008744
AMCG00008743 mRNA downstream 165245 10472530 ~ 10489766 (-) True AMCG00008743
AMCG00008741 mRNA downstream 284695 10340167 ~ 10370316 (-) True AMCG00008741
AMCG00008739 mRNA downstream 397160 10221420 ~ 10257851 (-) True AMCG00008739
AMCG00008740 mRNA downstream 461746 10183119 ~ 10193265 (-) True AMCG00008740
AMCG00008748 mRNA upstream 8758 10670949 ~ 10678973 (-) False AMCG00008748
AMCG00008750 mRNA upstream 57301 10719492 ~ 10725176 (-) True AMCG00008750
AMCG00008751 mRNA upstream 101825 10764016 ~ 10771654 (-) True AMCG00008751
AMCG00008756 mRNA upstream 296393 10958584 ~ 10972379 (-) True AMCG00008756
AMCG00008765 mRNA upstream 341965 11004156 ~ 11011571 (-) True AMCG00008765
TU64089 other downstream 51638 10573483 ~ 10603373 (-) False AMCG00008744
TU63794 other downstream 1261784 9390843 ~ 9393227 (-) True G51008
TU63526 other downstream 1994994 8656728 ~ 8660017 (-) True G50788
TU63463 other downstream 2283681 8367916 ~ 8371330 (-) True G50739
TU63429 other downstream 2360657 8270324 ~ 8294354 (-) False G50712
TU64119 other upstream 15072 10677263 ~ 10718201 (-) False AMCG00008748
TU64120 other upstream 15072 10677263 ~ 10700483 (-) True AMCG00008748
TU64105 other upstream 18087 10680278 ~ 10712485 (-) False G51241
TU64108 other upstream 18087 10680278 ~ 10682873 (-) True G51241
TU64128 other upstream 135441 10797632 ~ 10799154 (-) True G51250

Expression Profile