RNA id: TU64120


Basic Information

Item Value
RNA id TU64120
length 1148
RNA type TUCP
GC content 0.59
exon number 6
gene id AMCG00008748
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10670949 ~ 10718201 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACCTTGTCGATGAAGGAGGCGAAGCGGTTGTTGAGAGTCTTGATCTGCTCCTTCTCCTGGGTGCGGACCACCTGGATGTTGGGGTCGATAACTAAGTCCGGGGGGTTCAGCAGTTTCAGATTGGCAGTCACGGAGGTGATGAGAGGGACGCCGCCATCTCCGCCACCGAACATGCCATACCCTCCGCCGCCGCTGCCACCACCACCGCCACCTCCCAAGCCGATGCCACCTCCCAGGCCGAtgccgccaccaccaccaccaccggaTCCAAAGCCTAAGCCACCACCTGATGAGTACACAGTGTAGCTTGACTTCCGAGTCACTGGCGCCGCAGCCAAGGACCTGCTGGTAAAGCTTCTATAACTGCCCCCGCTGCTGCCACCACCGCCGCCACCGCCGCCACCGCCCATGCTGACGCGGCCACTGCTGATACggccactgccccccccacccccagagcTGGATCTGAAACTTATAGAGGAACGACTGCTGCTCatttttgctgctgttgctgtttttcctgTGCAAGGTCGAAGTCAAGCTGAGAACTGATAAATGATAATAGTAAAATAAGCCAAAGAGGTATCGCCTCGAACGAGAGAGCAGGCGAGGAGGGAACAGCAGCGATCACAAGAAGGAGAATCAACTCCTCTGAGCCGCTACCTGCCTTGGTCCCCACCTATATACCCTTCAAGAGTGGGCGGGTCCACCTCCTGTTTGAGACACTACCTCCACCCCTCTCAGGGCCATCTACGAGGAGGAGCTGCGCGAGCTGCAGGGCCAGATCAAGGACACCTCAGTGGTGGTGGAGATGGACAACAGCCGCAACCTGGACATGGACTCCATCGTGGCTGAAGTGCGCGCCCAGTATGAGGACATTGCCAACCGGAGCCGTGCAGAGGCGGAGAGCTGGTACAAGGCCAAGTACGAGGAGATGCAGAGCTCAGCTGGGAAATTTGGGGATGACCTCCGCAACACCAAGCAAGAGATTGCTGAGCTGAACCGCATGATCAGCCGGCTGCAGAATGAGATCGAGGCTGTCAAGGGCCAGCGCGCCAACCTGGAGGCCCAAATCACAGAGGCTGAGGAGCGCGGTGAGCTGGCGGTGAAGGACGCCAAGGCCAGGATCAAGGACCTGGAAGACGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64116 lncRNA downstream 3408 10668711 ~ 10673855 (-) True G51243
TU64025 lncRNA downstream 334098 10338325 ~ 10343165 (-) False AMCG00008741
TU63928 lncRNA downstream 746161 9927245 ~ 9931102 (-) True G51120
TU63909 lncRNA downstream 766463 9909611 ~ 9910800 (-) True G51103
TU63883 lncRNA downstream 938007 9738646 ~ 9739256 (-) True G51081
TU64129 lncRNA upstream 100625 10801108 ~ 10803709 (-) True G51251
TU64130 lncRNA upstream 100625 10801108 ~ 10803709 (-) False G51251
TU64148 lncRNA upstream 138623 10839106 ~ 10839672 (-) True G51261
TU64265 lncRNA upstream 357194 11057677 ~ 11059926 (-) True G51344
TU64261 lncRNA upstream 357207 11057690 ~ 11140273 (-) False G51344
AMCG00008747 mRNA downstream 15072 10655011 ~ 10662191 (-) True AMCG00008747
AMCG00008744 mRNA downstream 102362 10560866 ~ 10574901 (-) True AMCG00008744
AMCG00008743 mRNA downstream 187497 10472530 ~ 10489766 (-) True AMCG00008743
AMCG00008741 mRNA downstream 306947 10340167 ~ 10370316 (-) True AMCG00008741
AMCG00008739 mRNA downstream 419412 10221420 ~ 10257851 (-) True AMCG00008739
AMCG00008750 mRNA upstream 19009 10719492 ~ 10725176 (-) True AMCG00008750
AMCG00008751 mRNA upstream 63533 10764016 ~ 10771654 (-) True AMCG00008751
AMCG00008756 mRNA upstream 258101 10958584 ~ 10972379 (-) True AMCG00008756
AMCG00008765 mRNA upstream 303673 11004156 ~ 11011571 (-) True AMCG00008765
AMCG00008763 mRNA upstream 321065 11021548 ~ 11035727 (-) True AMCG00008763
TU64089 other downstream 73890 10573483 ~ 10603373 (-) False AMCG00008744
TU63794 other downstream 1284036 9390843 ~ 9393227 (-) True G51008
TU63526 other downstream 2017246 8656728 ~ 8660017 (-) True G50788
TU63463 other downstream 2305933 8367916 ~ 8371330 (-) True G50739
TU63430 other downstream 2382909 8291799 ~ 8294354 (-) False G50712
TU64128 other upstream 97149 10797632 ~ 10799154 (-) True G51250
TU64340 other upstream 535159 11235642 ~ 11295750 (-) False AMCG00008777
TU64350 other upstream 620327 11320810 ~ 11326359 (-) False AMCG00008777
TU64811 other upstream 2190328 12890811 ~ 12891597 (-) True G51797
TU64813 other upstream 2194852 12895335 ~ 12897134 (-) True G51799

Expression Profile