RNA id: AMCG00008752


Basic Information

Item Value
RNA id AMCG00008752
length 2217
RNA type mRNA
GC content 0.60
exon number 14
gene id AMCG00008752
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10828568 ~ 10846436 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGGGCCCATGCTGCGGCTGAGCGCTGCCATTGGCCCGCGGCAGGTCGGGCGTCCTCCCGAGCGGCGACTCCGCGGCCACGTGATAAACACGTGACGCCTCCATCCGGGACTCTGACACGGACTCACTCTCCATCATGGCGGCGTCAGCtaagaagaagaataagaaggGGAAGACCCTCACCCTGACCGACTTCCTGGCAGAGGACAGTGGTGGCAATGCACCCAGCTACCCCGCCCCCAAGCCCACCAGCTGGGCAGACGAGACTGATGACCTGGAAGGAGATGTTTCCACCTCATGGCACACAGAGGACGACATGTACCGCGCCCCCCCCATTGACCGCTCTATCCTGCCCACGGCACCCCGCGCCGCCCGTGAGCCCAATGTGGACCGTTCCCGCCTGCCCCGCAGCCCCCCCTACACCGCCTTCCTGGGCAACCTGCCCTACGATGTCAGTGAGGACTCAATCAAGGACTTCTTCAGGGGGCTCAGTatcAGCGCTGTGCGGCTGCCCAGAGAGCCCAGCAACCCTGAGCGTCTCAAAGGCTTTGGCTACGCTGAGTTTGATGATGTGGACTCCTTGCTGCGAGCCCTGAGTCTCAACGAGGAGAACCTGGGTAACCGAAGAATCCGAGTGGACATTGCAGACCAGTCACAAGAGAAAGATCGTGATGATCGCTCTGGGTGTGGCCGTGACCGGGACAGGAACAGGAGCGACGGCGGCCCTGACAAGACAGACAGTGACTGGAGGGCACGGCCGAGCGCGGACAGCGACGACTCTGGCCCGCCTCGGCGCGATGACGCTTTTGGCGAGCGGTCAAGGGATCGCTATGAGTCGGACCGCTTCCGCGATGGCCCGCGGAGGGACAATGACCGGTATGAGGGGGGCAGAGACCGTTACCGGGACAGATATGATGACCGGGACCGTCGCGACTACGACCGAGGAGGATTCGACTCTCGCGGTGGCAGCCGGCGGGCTTTCGGCAGCGGGTTCAGGCGTGACAACGACGACGGACGTGACAATTTCCGGGGCAGTGCAGATCGCTATGGCGACCGGTACGGGGAACGCGAAGAACGTTACGAGCGCAAGGATGAGCGCCGTGACGATAGAGGCCCACTGCAGAGGCCCAAGCTCCAGCTGAAGCCCCGCAGCGTGCCCAAGGAGGAGGACCGGGTTGTGCCCCCCACACAGACGGGCCGCGCAGCCTCCATCTTCGGAGGGGCGAAGCCCGTGGACACCGCGGCCAAGGAGCGCGAGGTGGAGGAGCGCCTGAAAAAGGAGCAGGAGAGGCTGCAGAGGCAGCTGGAGGAGGACAAGGGCAGAGCACCCGAGCGGCGGCCCAGGGAGAGGCATCCGAGCTGGCGCAGTGAGGACCAGCCTGCTGAGCGATCAAGGACTGGGAGCGAGTCTTCCCAACCTGGCAGCACTTCTGGACGGAGTTCCCGACGCAGGGAGAGCGAGCGTTCTGTGGAGAACGAGGTGTTTGGACGTGATGAGGACCCCCCTTCCCCTGGGGCCCGCCCCCCTGCCAAGCATGACTCCCTGCCCCTCAAAGTGGTGCCAGCCCCTCCGCCCAAGGAGAATGCTTGGGCCAAGCGGAGCACTGTGTCTGGAGGCTCCAGTGAGGGAGAGGGGCGCTCCCCAACGCCTCCTCCCCCTCAATGTCGGGCTCTCCTTGCAGATGAGAACAAGGCGGATGGTGTGCGGCGGGAGAGAGGCCCCGCGAAGGGGCGGGGGGGTACAGCGGGTCCCGGGACAGGGAGGGGGCATGCCGACGCAGCGAACAGAGACCGGCGAAGGGAGGCAGACAGAAAAGACGGAAGAAGGGAACGAGACTGCAGACCAGCACCTGAGCCAAAGAAATTCGAGGAATCACCCAGTCCTAAATTCAGCTCCGCAAGTAAATACGCAGCCTTGCTAATGGACGGCGAGCAAGGAGATGATGTGGAGGAAAACatggattaaaaaatattacatcattaatcaattaaaagtaaaaatgataaaaaaaggaaaaaaaaaatctccacaACCGGACAAGCACCGGCTATTCCtctccccaaccccccccaccccacttcCCTTTCAGGACTCTCTATCTGAAATAGAATATACGGGACTTGTGTTTTAAAAGAggagggggaaaagaaaaaaagaatggcaaaattgaataaataattataataaataaaaaagtggaaaaaccTTCAAAGTGAA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K03258 EIF4B; translation initiation factor 4B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64131 lncRNA upstream 24461 10803906 ~ 10804107 (+) True G51252
TU64061 lncRNA upstream 56893 10768653 ~ 10771675 (+) False AMCG00008749
TU64058 lncRNA upstream 110406 10692377 ~ 10718162 (+) False AMCG00008749
TU64080 lncRNA upstream 116083 10681116 ~ 10712485 (+) False G51226
TU64078 lncRNA upstream 145689 10681116 ~ 10682879 (+) False G51226
TU64158 lncRNA downstream 21499 10867935 ~ 10910645 (+) True G51265
TU64180 lncRNA downstream 104641 10951077 ~ 10953420 (+) True G51283
TU64202 lncRNA downstream 173780 11020216 ~ 11024020 (+) False G51298
TU64205 lncRNA downstream 173780 11020216 ~ 11057436 (+) True G51298
TU64199 lncRNA downstream 191905 11038341 ~ 11040674 (+) True G51297
AMCG00008753 mRNA upstream 24896 10797771 ~ 10803672 (+) True AMCG00008753
AMCG00008749 mRNA upstream 109252 10692535 ~ 10719316 (+) True AMCG00008749
AMCG00008746 mRNA upstream 203399 10618726 ~ 10625169 (+) True AMCG00008746
AMCG00008745 mRNA upstream 210403 10611383 ~ 10618165 (+) True AMCG00008745
AMCG00008742 mRNA upstream 516471 10311582 ~ 10312097 (+) True AMCG00008742
AMCG00008754 mRNA downstream 48606 10895042 ~ 10906610 (+) True AMCG00008754
AMCG00008755 mRNA downstream 64691 10911127 ~ 10929774 (+) True AMCG00008755
AMCG00008758 mRNA downstream 91803 10938239 ~ 10949947 (+) True AMCG00008758
AMCG00008757 mRNA downstream 103578 10950014 ~ 10950787 (+) True AMCG00008757
AMCG00008759 mRNA downstream 151134 10997570 ~ 11017498 (+) True AMCG00008759
TU64057 other upstream 121475 10705478 ~ 10707093 (+) False AMCG00008749
TU63913 other upstream 897487 9929478 ~ 9931081 (+) False AMCG00008727
TU63914 other upstream 897487 9929478 ~ 9931081 (+) False AMCG00008727
TU63744 other upstream 1512417 9310086 ~ 9316151 (+) False AMCG00008710
TU64201 other downstream 138454 10984890 ~ 11040674 (+) False G51297
TU64384 other downstream 613927 11460363 ~ 11465488 (+) True G51445
TU64730 other downstream 1869058 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 1996279 12842715 ~ 12846233 (+) True G51756
TU64826 other downstream 2078802 12925238 ~ 12926794 (+) True G51812

Expression Profile