RNA id: TU64133



Basic Information


Item Value
RNA id TU64133
length 526
lncRNA type sense_over
GC content 0.43
exon number 3
gene id AMCG00008752
representative False

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10828568 ~ 10846436 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CACAGTTACCTTACATGTAAAAATAGCACTTATAATTTATAGCGCATGAATCCGTGCAGTTCTGCTCTTAAGCCGACGATAACAGTACCATGATCCACAGATGAATGCACCGTTGTTTGTCCAAGAACTGAAGTCCTGCTTTTGTGTCCTCCATTTTGATCTCTCTCTGATTggactgtttttgttgtgtccccccccccccgttttGTCTGCAATTCCATTCATCCTCCAGTTCCTCAAGCTCTTCAGATGAAAAAGCGTCTCAAAAAGAAAAGACGGAAGAAGGGAACGAGACTGCAGACCAGCACCTGAGCCAAAGAAATTCGAGGAATCACCCAGTCCTAAATTCAGCTCCGCAAGTAAATACGCAGCCTTGCTAATGGACGGCGAGCAAGGAGATGATGTGGAGGAAAACatggattaaaaaatattacatcattaatcaattaaaagtaaaaatgataaaaaaaggaaaaaaaaaatctccacaACCGGACAAGCACCGGCTATTCCtctccccaacccc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU64131 lncRNA upstream 40274 10803906 ~ 10804107 (+) True G51252
TU64061 lncRNA upstream 72706 10768653 ~ 10771675 (+) False AMCG00008749
TU64058 lncRNA upstream 126219 10692377 ~ 10718162 (+) False AMCG00008749
TU64080 lncRNA upstream 131896 10681116 ~ 10712485 (+) False G51226
TU64078 lncRNA upstream 161502 10681116 ~ 10682879 (+) False G51226
TU64158 lncRNA downstream 21649 10867935 ~ 10910645 (+) True G51265
TU64180 lncRNA downstream 104791 10951077 ~ 10953420 (+) True G51283
TU64202 lncRNA downstream 173930 11020216 ~ 11024020 (+) False G51298
TU64205 lncRNA downstream 173930 11020216 ~ 11057436 (+) True G51298
TU64199 lncRNA downstream 192055 11038341 ~ 11040674 (+) True G51297
AMCG00008753 mRNA upstream 40709 10797771 ~ 10803672 (+) True AMCG00008753
AMCG00008749 mRNA upstream 125065 10692535 ~ 10719316 (+) True AMCG00008749
AMCG00008746 mRNA upstream 219212 10618726 ~ 10625169 (+) True AMCG00008746
AMCG00008745 mRNA upstream 226216 10611383 ~ 10618165 (+) True AMCG00008745
AMCG00008742 mRNA upstream 532284 10311582 ~ 10312097 (+) True AMCG00008742
AMCG00008754 mRNA downstream 48756 10895042 ~ 10906610 (+) True AMCG00008754
AMCG00008755 mRNA downstream 64841 10911127 ~ 10929774 (+) True AMCG00008755
AMCG00008758 mRNA downstream 91953 10938239 ~ 10949947 (+) True AMCG00008758
AMCG00008757 mRNA downstream 103728 10950014 ~ 10950787 (+) True AMCG00008757
AMCG00008759 mRNA downstream 151284 10997570 ~ 11017498 (+) True AMCG00008759
TU64057 other upstream 137288 10705478 ~ 10707093 (+) False AMCG00008749
TU63913 other upstream 913300 9929478 ~ 9931081 (+) False AMCG00008727
TU63914 other upstream 913300 9929478 ~ 9931081 (+) False AMCG00008727
TU63744 other upstream 1528230 9310086 ~ 9316151 (+) False AMCG00008710
TU64201 other downstream 138604 10984890 ~ 11040674 (+) False G51297
TU64384 other downstream 614077 11460363 ~ 11465488 (+) True G51445
TU64730 other downstream 1869208 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 1996429 12842715 ~ 12846233 (+) True G51756
TU64826 other downstream 2078952 12925238 ~ 12926794 (+) True G51812

Expression Profile