RNA id: AMCG00008756


Basic Information

Item Value
RNA id AMCG00008756
length 2453
RNA type mRNA
GC content 0.58
exon number 17
gene id AMCG00008756
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10958584 ~ 10972379 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACCAGTGACAGTGCCGGCGGGTCTTCCACCAGGAATCAAATCGTGCAGGTGCCGAGAAGTGTCTGTGTCGGAGGTGTTCGGCCGTGGCAGTGATGTGCTCCCTGGCTCTGTTTCCCCCACTGTCCCCCACCAAAGGTCAGGTGACCCTGTATGAGTCCAACAATGAGCTGGTGTCAGGCACGCTGGACAGCTATCAGAGACAGGATGGGGACCCCCTGTCGGTGATGATCCCCAAGGAGAGCCTGAAGCCCCACTGCCGGTTGGAGAGCAGCAGCAAGACGGCGTTCATCGACCACGTGGAGACGCTGTGGATGAGGAGCGCCAATGCCTGGAGGGACGCGGGGTTCTGTGGACTCCTCAATGAAATCGCCAACTCTGTGGATGAAGttcCCAGGTGGCTGGCTGTAGGCTCTGGTTTTAGTCTGGCTCTTCTGCGATGGGTTTCCTCTCTCCACGGCTCCCTCTTCCCCCACCTCAGCCTGAGCAGCGAGGACATGGTGGCCGAGTTCTCCCAGGTGCTGGCCTGGTCCGGCTGCTCGGTGCGTAGCTTTGCCTGGCACCCCCACACCGACAAGTTCGCCGTGGCGCTCCTGGACGACTCCATCAGGGTGTACAACTCCAAGAGTCCCACCGCACCTACCCTGAAGCACCGCCTCCAGAGGAGTGTGGCATCGCTGGCCTGGAAGCCGCTGTGTGCGTCGGCGCTGGCGGTAGCCTGTCAGAACTGCGTGCTGGTGTGGCATGTTGACCCCACCTCCCTCTCCACCAGGCCGTCCTCGGGCTGTGCCCAGGTGCTCTCTCACCCTGGCCACTCTCCCGTCACCTCCCTGGCCTGGGCGCCCAGCGGTTCAATCCTGCTGACTGCCTCCCCTGTGGACACTGCCATGATGgtGTGGGACGTGGCCGCAGAGAGCTGTGTTCCCCTCCAGAGAGTGGGTGGTGGGGGCGTGACCTTCCTGTCCTGGTCTCCCGACGGCGGCAGGGTCCTGGCTGCCACGCCTTCTGCCCTCTTCAGAGTCTGGGAGACGGGGATGTGGACGTGCTGCTGGAGTCCGGACGGGTCGCGCCTGCTGTTCTGTGTGCAGGGAGAAGCGCTGATCTATGCCCTGACCTTCGATGACACCCTGGgAGAGCCATTAGGCGGAGCCGGAGGGTCAAAGGCTGCTGCGATCGTGGCCGACCTGTCCGAGACCACCTTCCAGACGGCCGATGGACAGATCAGGGTCGGAGGGGACGTGCAGTCGCTGGTGTGGGACTCCAGCGGAGAGCGGCTGGCGGTGCTTCTTAAAGGTGACCCACAGAAAGCAGACAGCCCTGCCACCATCGCTGTCTTTAAGACTCGCAGCAGCCCTGTGTTTGAGCTCCTGCCCTGTGGTTTTGTCCAGGGGGAGACAGGTGCCGAGCCGAGGTTGATGCAGTTCCACCCCCACTTTGAGAAGGGAGCCCTGCTGACCGTGtgctggtccaatgggaggATCTCACACATCCCCTTCTACTTCGTGAGTGCAGGGGGGCCCCGACCCGGCCTGGGGGCCAGCCCTCCCTACCCCCTGCGCAGGGCGGCTGAGAATGGAGAGAGGCTGCTGTACACGGAGCTGAGCTTGTAGAGGAATCCTGATCCAGGCAGCCGCTGAGAGCACTACATCTGGTAGTCGtctcccaccccaccccaacccAACCCCTGGCCCAGACTGAAAGCTACAGACTGTCCCAAAGGGGATCCCCACTGCTACTCGAGTGGATCTCGGTTTCAAATGACTGGTGCCACACCCGTTTCCCTCCCACTGTGTTTGACTGCCTTTTAAGATGGAGTCTGAATTATCTTTGACTAGTTAAGGCTCATTAACTTGTTTCAATTGCTGCTGAGACGGGTATTGGACTGTTTAAGGATGCACTGTGTGTGGGTTTGGTGACATTAATGGAGACGCACATTGGAAGAAATGTTTGGTCTTTAACTATTGTCACCCTCACATTCTGGCCAGTGGTTGACTGTATCCCCTTAACGCATCGAATGAGTGCAGAATCATGGCCAGCAGCTTTGGTGTATGGAGGTGCTGTGTGACTGCTTTAAATTCAAGGAATGCTTAAGGGTAGAAGTGCTTGCAAACTTGGTGTATCATGTGAGCGGCCAGAGAAATGCCTCCTGCCTGTCCCCTGTGAGAGGAGGGCTGCTGTGATGGGTGGTCGGGTGGGCACAGAGCAATTTGCATTTGaccaatattaaaaaataaatggggagAAATAAGTCAAGTGTAAGTATCTGTTCCCCCCACCCTCTCCGTTtcctatgtgtgtgtttgctggctGTAAGATGTCTGAGCTCGGTGCAGAGAGCATAGATAGCTTGCTAACCATGTTCATGGCATTTCCACAAGAATCTCCCAGACTCTCTTGGTCTGTCTCAATCCTGTGAGGAGGGGGGGGAAGTGTGGGTACCCATAAGTGTTTTTTG

Function

GO: NA

KEGG:

id description
K14320 AAAS; aladin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64148 lncRNA downstream 118912 10839106 ~ 10839672 (-) True G51261
TU64129 lncRNA downstream 154875 10801108 ~ 10803709 (-) True G51251
TU64130 lncRNA downstream 154875 10801108 ~ 10803709 (-) False G51251
TU64104 lncRNA downstream 246099 10675756 ~ 10712485 (-) False G51241
TU64106 lncRNA downstream 246099 10675756 ~ 10712485 (-) False G51241
TU64265 lncRNA upstream 85298 11057677 ~ 11059926 (-) True G51344
TU64261 lncRNA upstream 85311 11057690 ~ 11140273 (-) False G51344
TU64262 lncRNA upstream 85311 11057690 ~ 11059926 (-) False G51344
TU64266 lncRNA upstream 85311 11057690 ~ 11059926 (-) False G51344
TU64280 lncRNA upstream 190967 11163346 ~ 11164374 (-) True G51354
AMCG00008751 mRNA downstream 186930 10764016 ~ 10771654 (-) True AMCG00008751
AMCG00008750 mRNA downstream 233408 10719492 ~ 10725176 (-) True AMCG00008750
AMCG00008748 mRNA downstream 279611 10670949 ~ 10678973 (-) False AMCG00008748
AMCG00008747 mRNA downstream 296393 10655011 ~ 10662191 (-) True AMCG00008747
AMCG00008744 mRNA downstream 383683 10560866 ~ 10574901 (-) True AMCG00008744
AMCG00008765 mRNA upstream 31777 11004156 ~ 11011571 (-) True AMCG00008765
AMCG00008763 mRNA upstream 49169 11021548 ~ 11035727 (-) True AMCG00008763
AMCG00008761 mRNA upstream 65923 11038302 ~ 11044119 (-) True AMCG00008761
AMCG00008764 mRNA upstream 72584 11044963 ~ 11051426 (-) True AMCG00008764
AMCG00008762 mRNA upstream 89908 11062287 ~ 11073591 (-) True AMCG00008762
TU64128 other downstream 159430 10797632 ~ 10799154 (-) True G51250
TU64119 other downstream 240383 10677263 ~ 10718201 (-) False AMCG00008748
TU64105 other downstream 246099 10680278 ~ 10712485 (-) False G51241
TU64120 other downstream 258101 10677263 ~ 10700483 (-) True AMCG00008748
TU64108 other downstream 275711 10680278 ~ 10682873 (-) True G51241
TU64340 other upstream 263263 11235642 ~ 11295750 (-) False AMCG00008777
TU64350 other upstream 348431 11320810 ~ 11326359 (-) False AMCG00008777
TU64811 other upstream 1918432 12890811 ~ 12891597 (-) True G51797
TU64813 other upstream 1922956 12895335 ~ 12897134 (-) True G51799
TU64897 other upstream 2028447 13000826 ~ 13001888 (-) True G51867

Expression Profile