RNA id: AMCG00008760


Basic Information

Item Value
RNA id AMCG00008760
length 1305
RNA type mRNA
GC content 0.59
exon number 8
gene id AMCG00008760
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 11052742 ~ 11061279 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCAGGTGCAGTTGTTTTAACGCTGTTTCAGCACTAGACTCGTGTTAAACGTTTCCCTTATAGTAAAGATGAGGCTGATGCACTTTTGTATGAGAGTCTGGGTCGGCAGTTCAGTGAGTGCGTTGCTTCTAGCCACAAAGCATGTGCTTGTTCTCGCAATAAATCTCTTCTCCCGATCAGCAGGCTCGACTCGGcattgcttctctctccatggaGCTCGCTGACCTTTTCTCGGACGACTCCGGCAATGACAACGATAAAACCTTCTATGGTTTCGCCGACAGCGACCTGGACAATGAGtgctctGACAGTGTTGTGGAGAGCTCTCCAGGCTCCCGTCCAGACCAGTTCACCCACCAGTGCTTCACCCTCAAAGTGGTGCTGCGGCCAAGAGCTCCACACCaaagtgaggaggaggaggaagaagagcaGAAACGGGGAGAGTCTGGGCCTTCCATCCTCGCTGCCCCCAAGTCCAGCTCGGACTCCGAGGAAGAGTCCCGTCGCAACTTCATGGAGAAGAGAGCCCTGAACGTCAAGGCCAACAAAGCCATGCTTGCCCAGCTGATGGCTGACCTGACCAAGATGCCGGGATCCTACCTGAAGCCACAGAAGCCAATAGAGAGAGGATCTGGCACTAAGCCAAAACGTGCCCCTCGCTCCGCGATGGTCGGGGAGGGGGCTGTGAGGCGGAACCCGGAGAGAGCATCCCGCAGACAGACTCGCTCCATGGGGGTGGTTTCCCGCTCGCCCTCCCCCGGGGATgaccagcagctgcagcagagtCTTGAGGATGAGCTGATGGAGGTGAGAGGCCCCCCCCGGCAGCGGCGCCCCCCACCCCGTCCCAGCATGGTCCAGCCCCACACCATCCGGCCTGTGGAGGAGATCACCCGGGAAGAGCTGGAGCTGGTGGCTGAGAACAGCACCCAGAAAACCTACAGCAGCGCCTCTGGCTCTACCTGTCACCAGTGCCGGCAGAAGACAATCGACACCAAGACCTGTTGCAGGAGTCTCGAGTGCCGTGGGGTGCAGGGCCAGTTCTGTGGGCCGTGTCTGCGCAACCGCTATGGAGAAGAGGTCCGGGATGCCCTGCTGAACCCTGAGTGGACATGCCCACCGTGCCGGGGGATCTGCAACTGTAGCTTCTGCCGCCAGCGCGACGGCCGCTGCCCCACCGGCATCCTCTTCCCCCTCGCGCAGTACCACGGCTTCAAGGATGTGCACTCCTACCTCAGCAGGATTACAATTCCCTACAGCTACTCCCTTCTCCAGATAGACAACATCCCTAACCAAGCTCAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64199 lncRNA upstream 12068 11038341 ~ 11040674 (+) True G51297
TU64202 lncRNA upstream 28722 11020216 ~ 11024020 (+) False G51298
TU64180 lncRNA upstream 99322 10951077 ~ 10953420 (+) True G51283
TU64158 lncRNA upstream 142097 10867935 ~ 10910645 (+) True G51265
TU64133 lncRNA upstream 206456 10844381 ~ 10846286 (+) False AMCG00008752
TU64385 lncRNA downstream 404533 11465812 ~ 11466083 (+) True G51446
TU64432 lncRNA downstream 633375 11694654 ~ 11704413 (+) True AMCG00008784
TU64429 lncRNA downstream 651433 11712712 ~ 11716482 (+) False G51483
TU64430 lncRNA downstream 651433 11712712 ~ 11716482 (+) True G51483
TU64537 lncRNA downstream 1000795 12062074 ~ 12062289 (+) True G51582
AMCG00008759 mRNA upstream 35244 10997570 ~ 11017498 (+) True AMCG00008759
AMCG00008757 mRNA upstream 101955 10950014 ~ 10950787 (+) True AMCG00008757
AMCG00008758 mRNA upstream 102795 10938239 ~ 10949947 (+) True AMCG00008758
AMCG00008755 mRNA upstream 122968 10911127 ~ 10929774 (+) True AMCG00008755
AMCG00008754 mRNA upstream 146132 10895042 ~ 10906610 (+) True AMCG00008754
AMCG00008768 mRNA downstream 53745 11115024 ~ 11122159 (+) True AMCG00008768
AMCG00008769 mRNA downstream 82743 11144022 ~ 11152563 (+) True AMCG00008769
AMCG00008770 mRNA downstream 121938 11183217 ~ 11189156 (+) True AMCG00008770
AMCG00008771 mRNA downstream 128143 11189422 ~ 11197752 (+) True AMCG00008771
AMCG00008774 mRNA downstream 218633 11279912 ~ 11291300 (+) True AMCG00008774
TU64201 other upstream 12068 10984890 ~ 11040674 (+) False G51297
TU64057 other upstream 345649 10705478 ~ 10707093 (+) False AMCG00008749
TU63913 other upstream 1121661 9929478 ~ 9931081 (+) False AMCG00008727
TU63914 other upstream 1121661 9929478 ~ 9931081 (+) False AMCG00008727
TU63744 other upstream 1736591 9310086 ~ 9316151 (+) False AMCG00008710
TU64384 other downstream 399084 11460363 ~ 11465488 (+) True G51445
TU64730 other downstream 1654215 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 1781436 12842715 ~ 12846233 (+) True G51756
TU64826 other downstream 1863959 12925238 ~ 12926794 (+) True G51812
TU64845 other downstream 1919525 12980804 ~ 12992492 (+) True AMCG00008837

Expression Profile