RNA id: AMCG00008763


Basic Information

Item Value
RNA id AMCG00008763
length 3373
RNA type mRNA
GC content 0.48
exon number 11
gene id AMCG00008763
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 11021548 ~ 11035727 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCcatctctcactgtctctcttcCCTTCTCCCCGGCTCCTTTTTAAACTCTCCCCCTGGGTTTTTTACCCACCCGAACCTCTCCCCTTCTACCCTTCAAACCCTACCCTCCCCCCTGAACACCTTTCAAGGCACGAAACAgATTCCATTCTTGTGACCAAAGACACCAGTTCTTCTTGACCAGCCTGACCCTATCCCTGTCACTACTTCAACATGGACTCCGGTGTAATTGAAGGAGGACTCAATGTCACCCTCACCATCAGACTGCTCATGCATGGCAAGgaagTTGGAAGCATTATTGGCAAGAAAGGAGAATCTGTGAAGAAGATGCGAGAAGAGAGTGGTGCACGCATCAACATCTCTGAAGGCAACTGTCCCGAGAGGATCATCACCTTAGCTGGACCCACGACTGCCATTTTCAAAGCCTTCTCCATGATCATTGAGAAGCTAGAAGAGGATATCAGCAGCTCCATGACAAACAGCACGGCCACCAGCAAGCCTCCTGTGACTCTGCGCATCGTGGTGCCAGCCAGCCAGTGTGGCTCCCTCATTGGCAAGGGCGGCTGCAAGATCAAAGAGATCAGAGAGTCCACGGGTGCCCAGGTCCAGGTGGCTGGCGACATGCTGCCCAACTCCACGGAGCGTGCCATCACCATTGCGGGAACCCCCCAGTCCATCATCGAGTGTGTGAAGCAGATCTGCGTTGTCATGCTCGAGTCTCCTCCAAAGGGTGTGACCATCCCTTACAGACCCAAGCCATCCGGCTCTCCGGTCATCTTTGCTGGTGGACAGGCTTATTCTGTTCAAGGACAGCATGCCATTGCCCAGCCAGATCTAATTGGATGCATCATTGGTCGCCAAGGCGCCAAGATCAACGAGATACGCCAGATGTCCGGCGCACAAATCAAAATAGCCAACCCCGTGGAGGGCTCCTCCGATCGCCAGGTCACCATCACAGGCTCCCCGGCCAGCATCAGCCTGGCAGAGTACCTCATCAATGCCAGtgTAGAGTCTGCTAAACCTTCCTCGATCCCTGAGCCGCACCTCAGCATGAGCCTCTGTCAGCCCTGCCCCccctctactactactacttctaccactccttctcctcctcctactactactgctacctcctcctcctcttcctccttctctgtGGTGTCTTCCCCAGCCTCCATCACCCTCTCCTCCCTGCTGGCTCCGGGCCCCCCCTcctcagcctcctcctcctctgactCCCTGCTCCCCAGCTCCCCAGTCTGTGTCTCCAGTCTGCTTGGCATGAAACCTGTTCCTCTGCTGGCCCTCAATGTTGTTAGCACGCCCGCCAAGGGCCCAGCGGCGCCCACCGCCGCCACTGTGCCACCTGAAAATGCGGGCACGTCTGTCCCCTGTGCCACTAACAAACTGAGCTCTTCCGATCTGGCCTCCAAGTCCAAGAAAAGAAGGCTGTCTCCGTATTAAGGCCCATTCTGTTAAAAACAACCTCTGGTCCCTATTCACCCTGTATTGGATCCACTCTGCTTATGGCTTCAGTCTCCTGTATTGAACTGCATCCCAgttttttcatttaacttttttcaccCATGTTCCCCCACCTCACGTTTTTTTAACTGACTAACcatctacattttttaaattatatttattgaatttggtGTTCGGACATTTAATTGACCATGCTCATCTCCGCAATGAAATATAATGCTGGACGAagaaggcttttattttttacaaatttgGTTGCAAGTGGCAACAGCCAGTGCCTGAATCTTGCTGCGGAATGGCCTTGCTAATTATCAAGCACGTAACGCCTGTGGAGTGAGGAGTAGCTCATCTGCATTTATGTACCATGGACTTCAGGGCTGGATGTTTGTCTGGATATTGGTCTCAATAAACATTTGACTGAATCTTActgtgtggtggggggaggggggtatttctttatttgaagtgtattataatttataaatgggATTTTAGCCCTTCGTGGTTTTCCAGCAGTTGGGGTAAATCTCTCCTGGCAAAGCAGTCATTCTGCGGAGCTCACTCCACCCTGCAGTGCCAAAGAAATCGGTTAATCAGTGTGAAAGCATGGCCTTAAAGCCGGAGTTCCCCTAGTACAGCTGCAAAGGggatacaatatattatacaacttatacaaacaaacatttcccaCATATCAATACAAGGAAAAAGCCTtattgcagattaaaaaaaaaaactaaacacctGAAATCACTGAAATCCCAATTTACATTTCAACTTGCAAAAATGGCCCCTTCTCTAACACTCCTTTTGGGAGTAAGGTTTCTCTTTATGACATATGGAAGCCTTAAGAATCATGCCCTAGTCTCCGATATGCTACATTAATGTATTCCAAATCTTTAAGCTAGTGAGTGCATGGCTTACGGCCTCTGTGGGCATCTCCCTGTAGTGCCCGTCTCGGCACTGAAATCTGAGAAGCAGCCAGTATAGTGAAACTGAACATGAGTGCAATTTTAGTAGCTGCACGCACACCCACAAACACGTGTGCACACTTTCAAATTCATTCATATCCCCTGCAGGTGCCTGTTTAGTGGTGTACACCATTGTACACACAGCGAACAAAGgggttatttaaaatatctatagATTTGTCAGTGGATTTGGGTTTTTCTGACCAGTTGGTTAACCCTGCAAGTCATCCTCATGTCTTCATGAGATCTGGTTTGTCCTGGGTTTGATGCAGTGCCGTTTGCAATGTCCTCCTTAGTGTCTAGAACAAGCTTATACGTGAGCTCTACCAGTCCTCAAACTGGGCCTTTCACCTGTGTGGGTGTTATTACCTTTCAATCTCGTTTTTCTGTGGTGGTGAGCTTTGGGCACCATTCAGTGGGTTTTTGGGGGGTATTATGCAGCTAAGTCTTTTTGCATTGGAAGAGGTTTTCTATGTAAATGCATTGCAGTAAGAATACATGAATATTTAATGCATCTACAGTTTGTGTGTTAGTTTTGAAAACTCCCTGTAGAATGAATTTCCCCCTGCATAAGCTTTGGCCTTTTCATTCCCCATAAGTAGGAAATAGTTTTTGTTATATACTATAGCATGCTGAAGTGATGCACAGCTCTAATACTTAAACTGTTTGCTGTGATTCTTTTTTCTGTTGGTTGTAATGTTTTGCATTCCACAAACTGCATTAGTCACTGTCAAGTGCCGGTTTCAAGTTTGGGGGACTTGCCTAGAGATTTACCCTGGTTTTTCAGAACACAATCCTTTGTGGTGACTCATAAGGTAGTCCTAGGGGATGGTGAAACCCCTTATGCGTTGTTAAAATAGTTTGTAATGGTCAGTTTAATTGTCAGGCAGCAGATGGGGATGGGTTGTTTGAGA

Function

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64148 lncRNA downstream 181876 10839106 ~ 10839672 (-) True G51261
TU64129 lncRNA downstream 217839 10801108 ~ 10803709 (-) True G51251
TU64130 lncRNA downstream 217839 10801108 ~ 10803709 (-) False G51251
TU64107 lncRNA downstream 309063 10675756 ~ 10712485 (-) False G51241
TU64265 lncRNA upstream 21950 11057677 ~ 11059926 (-) True G51344
TU64261 lncRNA upstream 21963 11057690 ~ 11140273 (-) False G51344
TU64262 lncRNA upstream 21963 11057690 ~ 11059926 (-) False G51344
TU64266 lncRNA upstream 21963 11057690 ~ 11059926 (-) False G51344
TU64280 lncRNA upstream 127619 11163346 ~ 11164374 (-) True G51354
AMCG00008765 mRNA downstream 9977 11004156 ~ 11011571 (-) True AMCG00008765
AMCG00008756 mRNA downstream 49169 10958584 ~ 10972379 (-) True AMCG00008756
AMCG00008751 mRNA downstream 249894 10764016 ~ 10771654 (-) True AMCG00008751
AMCG00008750 mRNA downstream 296372 10719492 ~ 10725176 (-) True AMCG00008750
AMCG00008748 mRNA downstream 342575 10670949 ~ 10678973 (-) False AMCG00008748
AMCG00008761 mRNA upstream 2575 11038302 ~ 11044119 (-) True AMCG00008761
AMCG00008764 mRNA upstream 9236 11044963 ~ 11051426 (-) True AMCG00008764
AMCG00008762 mRNA upstream 26560 11062287 ~ 11073591 (-) True AMCG00008762
AMCG00008767 mRNA upstream 98459 11134186 ~ 11143361 (-) True AMCG00008767
AMCG00008766 mRNA upstream 115192 11150919 ~ 11171928 (-) True AMCG00008766
TU64128 other downstream 222394 10797632 ~ 10799154 (-) True G51250
TU64119 other downstream 303347 10677263 ~ 10718201 (-) False AMCG00008748
TU64340 other upstream 199915 11235642 ~ 11295750 (-) False AMCG00008777
TU64350 other upstream 285083 11320810 ~ 11326359 (-) False AMCG00008777
TU64811 other upstream 1855084 12890811 ~ 12891597 (-) True G51797
TU64813 other upstream 1859608 12895335 ~ 12897134 (-) True G51799
TU64897 other upstream 1965099 13000826 ~ 13001888 (-) True G51867

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000350_00349222_00357046.mRNA True 1416 mRNA 0.51 10 CI01000350 348766 ~ 357046 (-)