RNA id: AMCG00008769


Basic Information

Item Value
RNA id AMCG00008769
length 3016
RNA type mRNA
GC content 0.46
exon number 8
gene id AMCG00008769
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 11144022 ~ 11152563 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctgcatgtgagtgtgtgggggTTGTTTCAtatcgctgctgctgctgcaaggATTGTTAATGACAAAAACAGGGTTATTTGAGGAAAAGGGGGGGAATCTGGAATCCGACATTGTCAAGCCTTCTTTCTGTAAATAGGGAATGAACGACGAGAAAACACCGGCTAACTGCAAGAGAAACTCTGGGTGCCCCAGTATTGAGCAAATGCTGGCTCTGAACCCCGGAAAGACCCCCATCAGTTTGCTGCAGGAGTATGGGACGCGGATAGGGAAGACCCCCGTGTACGATCTGCTCAAGGCTGAGGGACAAGCGCACCAGCCCAACTTCACCTTCCGTGTGACTGTCGGTGACATCGGCTGCACAGGCCAGGGGCCAAGCAAGAAGGCAGCCAAACACAAGGCCGCTGAGGCAGCACTCAAACTTCTGAAGGGCTGCAACATGATGGAGGTGGTGGCAGATGGAGTCAGCTGCCAGTCGGAAGCCAAAGTCTCCAGCTCCACGCAGCAGGCTGAGTGCAATCCAGTGGGGGCATTGCAGgAGCTGGTTGTCCAGAAAGGCTGGCGGTTGCCAGAGTACACCGTGACGCAGGAGTCGGGTCCAGCACACCGCAAGGAGTTCACCATGACTTGCCGGGTCGAGCGGTTCATGGAGATTGGCAGTGGTACCTCCAAGAAGCTGGCCAAGAGGAACGCAGCAGCCAAGATGCTGGCACGGATCCACGATGTGCCGGTGGATCAACGCAACGGCAACGAAGCCGAACCCGAGGACGACCAATTCACAATGCAGCACTTGAGTGGCAAGCTGGAAGGAGGCAAGTAGGAGCGCAGTCTGAGCGGCCTGTGCCAGTGTCTGGTGGAGTTGTCCACCCAGCCTGTCACTGTGTGCCACGGCTTTGCGCCCACCAAGGACGCAGCCCGAGCCAGCGCCGCTCACAACGCCCTGCAGTACCTCAAGATCATGGCGGGTGGGAAGTAGTGAAACCATTCCCCGTCTCCATTCCTTTCACAGACTGATGACACTGTGCTGTGGATTTGCTCACTCTGGGATTTCCAAGAGATGGACACAACAAGACGGgggttaaacaaacaaattactaTAATTTTCTTACCTCAAACAGGGGGGCCGGGTACCAGTCACTGGGGGCTGCAGAGTGAGGGATGAGGGTAGCAGACTGAAAGTCGATGCATTAATGTCTGTATATTGATGTGTTATATAAATTACACGCATAATGTGTGTTTCTCCCCTTGGGGACTGGAGGTGGGCTCCCCTAGTTTACTATGCTCAGTCGATCTTGGTGTTTGGTTTCATGCCTCGTCTTCTGATCAGTTGTTAAACTGACTGAAGCCTTAACTgagtaatttgttttccaattagATGTTTTTGGGGGCTCTGTCCTTGGCAAAGAACATCTCTGCCCAGTTTGTTCTTGGCCAGAAATGCTCTATAGCAGTTAACTGGTAGGCGATGTAGGTTGTGCTCTGGATGGGACCCAGGAATTCTGGCcagaacagaacaaataaactaaaGCTAAGCAATATCTctataaaagtaataaaacattaaattaatagtgAACATGTTCACGTCAGttgaaacaaaagaagaaattgGAAGATTACAGGGGAATACAAGAAACAGGATTGGCCCattaacttattattttattgagattttaatttcctctgtgTCGTTTTGTCTTCAACCAAGGCTATCCCTCACTGCAAAGCTCTGTGATCACCACCGCTTTCCTCATtccattcagaaaacaaaacaaactaaatgtcTGCTGGACTATGACCTCTAACCCTTGACCTCCACTGTCCTCCAGCTCTGGTTGAATAGTGCATGGCAGGTAGGCAGCTATCTGTATGGGAAGGGGATTCAAATGTAAGCGCAATGCTATAATGAAATGCCATAGAGTTAATCCGAGATATGAAATGCAACGTGGAAGTCCAGTTCGTCAACAAGCAGGCATCTTTAACTGGTAGCTTGAAGGACGCATgattataaaaagtaataatttaaaatagatcTCTGAAAAGACCGATCGGGTCAGATTGCATCAGTGTTATAGGTCAAGATGTATTGTAACCCACTTGGAAAGCAAAGCCATACCGAATAGTGTTTTCAAACAATTTGTCTTGGGAGAAAAGTAGTTAATAATATCTTATACccacaatctcagcagcactgTTTGTAGAGTTTTCCATTAAAACctcaaccaaaaacaaaatgaaaaaaactttCTCTTTTAGACTCATGGGTTAGGTACAAGAAAGAACCTCATAAGGACAAGCGTGCAGTTTATGCTGtaatccttgttttttttacgGCAAGGGAAAGAtacatttggggaaaaaactgGGTACAAGATAAAATGGTCAATGGTGCTATGAATAGTGGGGTTAGGTTCTTTCAGGCATCAAAAGTTTATTCTCAGTTGGAGGGTGGGAGGGGGTACAACGTTGCACATTGAGACTGGAAGATCATCCTTATTGACTTATTTTCCATTGtgggttttgttatttttcttctttttcttttttttctttttccaagcTGACCACAAAACTAGCGGTTGATCCTCAGCGGCTTGCTGTAGAGAAATGTGTGggtgtcattttaatgcatcGCGACACAAGGGCTTTCAGAGAGATCGGGCTGCAGATAAGCAGGCTTTTAAAGGCTCAGAGCCCATCCAGAAAAAAATAGTACTGCAATAAAAAGAGGGCTTTCGCTCGCTATTGTGGAAACCCAAAGTGCTTACGGCTCTTAATGCGGTccatttaaatgtcttaatttaatgtaaaacatgcaaCTGGCAAGATCAGTGCTTCACTCTTAAACAGGTCATCGGAACAGTTATTTTTCGGTTGAATATGTTTGTCATGCAGCCGGGCAGCTGCAGTAGTAAGGTTTCATTGAGAGACTCCCATTAGTGCACATGCTAATTGGGTGTATATTTATTGAAAAGAGAAGGAAGGTAAATGTGTTAtgatcgtttttttttttttttaa

Function

GO: NA

KEGG:

id description
K18420 TARBP2; RISC-loading complex subunit TARBP2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64205 lncRNA upstream 86586 11020216 ~ 11057436 (+) True G51298
TU64199 lncRNA upstream 103348 11038341 ~ 11040674 (+) True G51297
TU64202 lncRNA upstream 120002 11020216 ~ 11024020 (+) False G51298
TU64180 lncRNA upstream 190602 10951077 ~ 10953420 (+) True G51283
TU64158 lncRNA upstream 233377 10867935 ~ 10910645 (+) True G51265
TU64385 lncRNA downstream 313249 11465812 ~ 11466083 (+) True G51446
TU64432 lncRNA downstream 542091 11694654 ~ 11704413 (+) True AMCG00008784
TU64429 lncRNA downstream 560149 11712712 ~ 11716482 (+) False G51483
TU64430 lncRNA downstream 560149 11712712 ~ 11716482 (+) True G51483
TU64537 lncRNA downstream 909511 12062074 ~ 12062289 (+) True G51582
AMCG00008768 mRNA upstream 21863 11115024 ~ 11122159 (+) True AMCG00008768
AMCG00008760 mRNA upstream 82743 11052742 ~ 11061279 (+) True AMCG00008760
AMCG00008759 mRNA upstream 126524 10997570 ~ 11017498 (+) True AMCG00008759
AMCG00008757 mRNA upstream 193235 10950014 ~ 10950787 (+) True AMCG00008757
AMCG00008758 mRNA upstream 194075 10938239 ~ 10949947 (+) True AMCG00008758
AMCG00008770 mRNA downstream 30654 11183217 ~ 11189156 (+) True AMCG00008770
AMCG00008771 mRNA downstream 36859 11189422 ~ 11197752 (+) True AMCG00008771
AMCG00008774 mRNA downstream 127349 11279912 ~ 11291300 (+) True AMCG00008774
AMCG00008775 mRNA downstream 179312 11331875 ~ 11336221 (+) True AMCG00008775
AMCG00008778 mRNA downstream 217150 11369713 ~ 11392029 (+) True AMCG00008778
TU64201 other upstream 103348 10984890 ~ 11040674 (+) False G51297
TU64057 other upstream 436929 10705478 ~ 10707093 (+) False AMCG00008749
TU63913 other upstream 1212941 9929478 ~ 9931081 (+) False AMCG00008727
TU63914 other upstream 1212941 9929478 ~ 9931081 (+) False AMCG00008727
TU63745 other upstream 1827871 9310086 ~ 9316151 (+) True AMCG00008710
TU64384 other downstream 307800 11460363 ~ 11465488 (+) True G51445
TU64730 other downstream 1562931 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 1690152 12842715 ~ 12846233 (+) True G51756
TU64826 other downstream 1772675 12925238 ~ 12926794 (+) True G51812
TU64845 other downstream 1828241 12980804 ~ 12992492 (+) True AMCG00008837

Expression Profile