RNA id: AMCG00008774


Basic Information

Item Value
RNA id AMCG00008774
length 1117
RNA type mRNA
GC content 0.59
exon number 10
gene id AMCG00008774
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 11279912 ~ 11291300 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAAACAAATCTCACTCTCGCTCGACGCGACGGAAGTTCACGCGAGATCGCCGGCTTCTCGCCCTTTGGCAAGCGCAGGGACTGTCAAATCCGGGCAATAATTGAAATCTAATCGTGACTAAACGACAATATTTTTAGGTAACACATCTCAGACCcgatatttattgattgattttgcaCAGAAACAGCGGATCAGAGGCCACGGCAAACCTCTTCCCATCCTCGCTTCCTGAGAGCTGCAGCTTCAACAACAATGGCGGATCCCAAGTATGCCAATTTGCCAGGCATTGCCTCCAATGAGCCTGATGTGTACGAGACCAGCGACCTCCCGGAAGATGACCAGGCTCAGTTTGAGTCGGAGGAGCTGTGCAGTGACAGCGTGGAGAGGATCGTGGTGAACCCCAATGCAGCCTACGACAAATTCAAAGACAAGAGAGTCAGCACCAAGGGCCTGGaTTTCTCGGATCGCATCAGTAAGACCAGGCGGATCGGCTACGAGTCCGGGGAGTATGAGATACTGGCAGAGGGCTGTGGTGTGAAGGAGACCCCCCAGCAGAAATACCAACGGCTGGTGAATGAGATCCAGGAACTGACGGAAGAGGTGGACCAGAtaaagacCAGCACTAAGGAGTCCAGCAGTGAGGAGCGGTTGACCCCGGCCGCCCTGGCGCAGCAGGCCGCTAAGCTGAAGCAGCAGCTGGTGGCATCTCACCTGGAGAGCATGCTGGGACCCCATGCCCACATCGCCCTCACCGACCCTGACGGAGCACTGGCACAGCGGCTGCTGACCCAGCTGGAGGTGGTGCGGGgccggggggccggggggcggTCGGCGGAGGTGGGGAAGGCGGGGGTGAAGGGGCCGGACGGGGTGGTGGTGTATGAGCTGCACAGCCGCCCAGAGCAGGACCACTTCACAGAGGCTGCCAAGaTTTCGGAGCTGGAGAAGCGCCTAGCAGAGCTGGAGACGGCAATGGGCTCTGGTGGCCCCGAGAGACAGAGTCCCCTGACCACAGGAGTGCAGGGAAGCAGTCTGGTGgaCACTATCGAGCTCCTGCAGGCCCGTGTCAGCGCTCTGGACTCAGCCACACTGGACCAGGTGGAGGCGAGACTGCAg

Function

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0005869 dynactin complex cellular_component

KEGG:

id description
K10424 DCTN2; dynactin 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64205 lncRNA upstream 222476 11020216 ~ 11057436 (+) True G51298
TU64199 lncRNA upstream 239238 11038341 ~ 11040674 (+) True G51297
TU64202 lncRNA upstream 255892 11020216 ~ 11024020 (+) False G51298
TU64180 lncRNA upstream 326492 10951077 ~ 10953420 (+) True G51283
TU64158 lncRNA upstream 369267 10867935 ~ 10910645 (+) True G51265
TU64385 lncRNA downstream 174512 11465812 ~ 11466083 (+) True G51446
TU64432 lncRNA downstream 403354 11694654 ~ 11704413 (+) True AMCG00008784
TU64429 lncRNA downstream 421412 11712712 ~ 11716482 (+) False G51483
TU64430 lncRNA downstream 421412 11712712 ~ 11716482 (+) True G51483
TU64537 lncRNA downstream 770774 12062074 ~ 12062289 (+) True G51582
AMCG00008771 mRNA upstream 82160 11189422 ~ 11197752 (+) True AMCG00008771
AMCG00008770 mRNA upstream 90756 11183217 ~ 11189156 (+) True AMCG00008770
AMCG00008769 mRNA upstream 127349 11144022 ~ 11152563 (+) True AMCG00008769
AMCG00008768 mRNA upstream 157753 11115024 ~ 11122159 (+) True AMCG00008768
AMCG00008760 mRNA upstream 218633 11052742 ~ 11061279 (+) True AMCG00008760
AMCG00008775 mRNA downstream 40575 11331875 ~ 11336221 (+) True AMCG00008775
AMCG00008778 mRNA downstream 78413 11369713 ~ 11392029 (+) True AMCG00008778
AMCG00008783 mRNA downstream 276558 11567858 ~ 11599637 (+) True AMCG00008783
AMCG00008782 mRNA downstream 311115 11602415 ~ 11618855 (+) True AMCG00008782
AMCG00008784 mRNA downstream 403541 11694841 ~ 11704408 (+) False AMCG00008784
TU64201 other upstream 239238 10984890 ~ 11040674 (+) False G51297
TU64057 other upstream 572819 10705478 ~ 10707093 (+) False AMCG00008749
TU63913 other upstream 1348831 9929478 ~ 9931081 (+) False AMCG00008727
TU63914 other upstream 1348831 9929478 ~ 9931081 (+) False AMCG00008727
TU63745 other upstream 1963761 9310086 ~ 9316151 (+) True AMCG00008710
TU64384 other downstream 169063 11460363 ~ 11465488 (+) True G51445
TU64730 other downstream 1424194 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 1551415 12842715 ~ 12846233 (+) True G51756
TU64826 other downstream 1633938 12925238 ~ 12926794 (+) True G51812
TU64845 other downstream 1689504 12980804 ~ 12992492 (+) True AMCG00008837

Expression Profile