RNA id: AMCG00008775



Basic Information


Item Value
RNA id AMCG00008775
length 761
RNA type mRNA
GC content 0.61
exon number 5
gene id AMCG00008775
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 11331875 ~ 11336221 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATCGCCGGGAGTTTCCGAAATTCGCATTCAGTGACATTACTGAACAATGGTTAACATGAGCTATCACCAATCCACTCCAGAAAATCAAAATACTGCGAACCCCAGACAGTCGAGAAAGcgaaataataaaagaaaaaggATTTGTTGGGGCACACCGTCTCCGCCGACACATCGCCAGACTTGATTAAAAGgtgCAGGGCAGTCAGATGACCGCAGAGTCGATGGCGTTCTCTCCATACCCTCCCGGCGTGGGGCCGCTGTGCGGGGCGGAGCTGGAGGCGTGGTACGAGGACCTGCAGGACATCCTGTGCTCGGATGCGGGTGGCCTGAAAAGTGTCCGGCCAGCCCAATGCCCTGAGAAGGAGCCGGAGTTCCTGGACGTGCTGGAGACCTGCTCCTTCGCCTGGCTGACGGACGGACAGCTGTGGGCCGAGGGGGAGCCGCTGCGCGCTGAGCCCCCACAGACTGCCAGCGCTGGGGGGGACCTGCTGCCTCCAGAGTTCTTCGAGCTGCTGAGCGAGGGAGCCGGGCTgggaggggaaggaggaggagagggagccAGGGTGATCGAGATCGTAGGCTGTCTCCAGGAGCTGcctgaagaggaggaggaggaggaggaggaggagggcgagggggaaggggaaggggaaggggagaggAACGGGCTCGACCCCTCACTGCTGTCCAGTGAAGAGGAGCTGCCCTCGGCCCCTGAGAGGGCGCTCATCGAGAAGCTGGTCAATACCAAGAAGTCCTAG

Function


GO:

id name namespace
GO:0046890 regulation of lipid biosynthetic process biological_process
GO:0070059 intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress biological_process

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU64205 lncRNA upstream 274439 11020216 ~ 11057436 (+) True G51298
TU64199 lncRNA upstream 291201 11038341 ~ 11040674 (+) True G51297
TU64202 lncRNA upstream 307855 11020216 ~ 11024020 (+) False G51298
TU64180 lncRNA upstream 378455 10951077 ~ 10953420 (+) True G51283
TU64158 lncRNA upstream 421230 10867935 ~ 10910645 (+) True G51265
TU64385 lncRNA downstream 129591 11465812 ~ 11466083 (+) True G51446
TU64432 lncRNA downstream 358433 11694654 ~ 11704413 (+) True AMCG00008784
TU64429 lncRNA downstream 376491 11712712 ~ 11716482 (+) False G51483
TU64430 lncRNA downstream 376491 11712712 ~ 11716482 (+) True G51483
TU64537 lncRNA downstream 725853 12062074 ~ 12062289 (+) True G51582
AMCG00008774 mRNA upstream 40575 11279912 ~ 11291300 (+) True AMCG00008774
AMCG00008771 mRNA upstream 134123 11189422 ~ 11197752 (+) True AMCG00008771
AMCG00008770 mRNA upstream 142719 11183217 ~ 11189156 (+) True AMCG00008770
AMCG00008769 mRNA upstream 179312 11144022 ~ 11152563 (+) True AMCG00008769
AMCG00008768 mRNA upstream 209716 11115024 ~ 11122159 (+) True AMCG00008768
AMCG00008778 mRNA downstream 33492 11369713 ~ 11392029 (+) True AMCG00008778
AMCG00008783 mRNA downstream 231637 11567858 ~ 11599637 (+) True AMCG00008783
AMCG00008782 mRNA downstream 266194 11602415 ~ 11618855 (+) True AMCG00008782
AMCG00008784 mRNA downstream 358620 11694841 ~ 11704408 (+) False AMCG00008784
AMCG00008787 mRNA downstream 497065 11833286 ~ 11834344 (+) True AMCG00008787
TU64201 other upstream 291201 10984890 ~ 11040674 (+) False G51297
TU64057 other upstream 624782 10705478 ~ 10707093 (+) False AMCG00008749
TU63913 other upstream 1400794 9929478 ~ 9931081 (+) False AMCG00008727
TU63914 other upstream 1400794 9929478 ~ 9931081 (+) False AMCG00008727
TU63745 other upstream 2015724 9310086 ~ 9316151 (+) True AMCG00008710
TU64384 other downstream 124142 11460363 ~ 11465488 (+) True G51445
TU64730 other downstream 1379273 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 1506494 12842715 ~ 12846233 (+) True G51756
TU64826 other downstream 1589017 12925238 ~ 12926794 (+) True G51812
TU64845 other downstream 1644583 12980804 ~ 12992492 (+) True AMCG00008837

Expression Profile