RNA id: AMCG00008776


Basic Information

Item Value
RNA id AMCG00008776
length 5354
RNA type mRNA
GC content 0.51
exon number 19
gene id AMCG00008776
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 11335776 ~ 11348560 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGTTAAGTAGCCGGTTTGTCGCGTGTTGTTTCGATAAGGTTCTGGTGCATGAGTTTGGAGCTGTAGCTTTTATTGATTAATGTcgttttcttaaaaaacagaagaccGTGAAAGAAATGAACGTAAAGATGACACTGTACGTCAGCGAGGGTAATCCGCACAGTCTGAAAGTACTGGCGGCGAATGAAATGACAGGGGTGAAATGTGACATAAAGTATGTCAATCACGACGAGAGAGTGGTGCCCTTCCTGAGCCGCCCCACAGTGCCAGCCCTGCGGCTCAGCTCTGGAAACTACCTGTTCTCCGCCAACGCCATCTGCCAGTACCTGTTCACACTCGGCGGACTGGAGCCCAGCGATGCGACCAATCAGTGGCTGGAGTGGGAGGGAACAGAACTCCAGCCCGCCGTGACCTTGGCACTCCATTTAGCAGCGCTGCAGGGGAAGAGGGCTGAAGCAGCACGGTCCCTTCAGAAACACCTGAGCTACCTGGACCAGAGACTGGCCAAGAGAGGAGCCCCCTACGTCACTTCGGAAGTGATGACAGTAGCTGATGTCGTCCTATGGGGGGCTCTGTACCCATTCCTCTCTGATGCCACTCTACTTCCTGGGGGGCTGCAGGCAGTGACAGGCTGGTTTGAGCGAGTCGGGGGGCATGCAGCTTGTAAGGCTGCAGCCCAGTCCATCCTGAAGGGAGGGGGACTCTCGACCCTGAAACCCTATCTACAGAGACAGCCGCCCCCCCGGCAGCGTAGTGAGAGACCTGCCAGCAACGAGCCAGAGGGGGAGAACGCGGAGCACACAATGACGGAGAAGGAGATCCAGGCGGACGTGGAGATCTGGAGTAAGGGCCTGTCCGCTTGTCCCAAGCCCAAGGAGATCCAGCACCCCATCCTGCCTCGGGAGGGGGAAAGAAACGTGCTGATCACCAGTGCCCTGCCCTACGTCAACAACGTACCTCACCTGGGGAACATCATCGGTTGCGTGCTGAGTGCGGATGTGTTTGCCAGGTTCTGCCGTCTGCGGGGCTTGACCACGCTGTTCGTGTGCGGGACGGACGAGTACGGGACGGCCACGGAGAACAAGGCGGCGGAGGAGGGGGTGTCACCGCGGGAGATCTGCGACAAGTACCACACTGTGCACGCCAACATCTACCGCTGGTTCAACATCAGCTTTGACTACTTCGGCAGGACCACCACGCCCCGGCAGACTGAGATTGCCCAGGACATCTTCGGGCGGCTGCTGGAGCGGGACTTCCTGCTGCCCGACACGGTGGAGCAGCTGCGGTGCGAGCACTGTGACCGCTTCCTGGCTGACCGCTTCGTGGAGGGCGTCTGTCCCTTCTGCTGCTACGAGGAGGCGCGGGGGGACCAGTGTGACAAGTGTGGCAAACTCATCAATGCCGTGGAGCTCAAGCTGGAGTCCCGTCTGGAGACGTGGCTGGAGAAGTCGGTCGGCACGGGCGACTGGACGCCCAACGCGCGCTTCATCACTCGCACCTGGATCCGCGACGGGCTGAAGCCACGCTGCATCACCCGCGACCTCAAGTGGGGCACCCCCGTGTTCTATGTGTGGTTCGACGCTCCCATTGGCTACCTGTCCATCACCGCCAATTACACCGACCAATGGGAGAAATGGTGGAAGAATCCAGAGCAGGTGCAGCTGTATAACTTCATGGCCAAAGACAACGTGCCCTTCCACAGCGTGGGCCAGGACAGCACCTTCTCCTGGGCCGACATGGCGCTGAAGAACAACTCCGAACTGCTCAACAACCTGGGCAACTTCATCAACAGGATCCGTGATGCTCTGAAATGCATCCTGAACATCTCTCGCCATGGCAACCAGCAGCGGACAGGCACAGTGACGGGGGTGGCAGTGAACCTGGCCTGTCTGCTGTCAGTGATGCTGCAGCCCTACATGCCCACAGTCAGCGCCACcatccaggagcagctgcaCGCGCCCCCCCACTGCAACACCCTGAGCGGGAAGTTCATCAGTCCATTGTTCCAGAAATTGGAAGCAGATCAGATTGAGGCTCTGAGGAACAGATTTGGGGGTCAGCAGAAAGCGACCAACGTGAAACCAGCTGATGAGGCTAAACCTGCAGCCCCTGCACTTGCCCCTGGTCTTATCCCTGAGACTGCTGGGAAAGCTGACCCCCAGAGAGCCAAGCAGCTCACAGAGGAGGTGGCACAACAGgGGGAGCGCGTGCGCACTCTCAAAGCCCAGAAAGCGGAGAAGTCCGTGATTGGAGCGGAGGTGGCCAAGCTGCTGGACCTGAAGAAGCAGCTGGTCCTGGCCGAGGGTAAGAACCCCGAGCCCCCCGTGACgaaaggaaagaagaaatgAGCTGAAGAACGGAAGGAGGGGAGGCAGCCATGGTGGATTCACTCCATTCCCCTGCCGGCTTTTGATCCTATTTGAACCTATTGACTGTTAATTCCAGACCCCAGAGATTGAAGAACAGCAATTTCACCGTATTCGCAAAACTGACTAGACAAGTTGCTATATTAGAACACTGTGTGCCATGTTAAGCAATATGCAATGTGCGATTGGCATCAGCTCAATAAGATTTGATCCAAAGcactatttatacatttttctatttgccACAATGTTTGACTTTTCTTTGTTGAGGGCTCTTTGGAAAGGAAGGGTTGGGACGCCTTAAAACCAGTCTCAGTTGCCTGATACATTTCTAAGCATTTTAACTCAGTCTAAAACTGGTTCTCTGAGCCAGTCTACAGTCACATTCTCGCTGCAcaaatctgacttttttttttttttcctcgttGGGAACAAACAGGAGTCTGTTTCATACAGGAACACAAACCTTTGGCAACTGAAAACGGAGAACGAAAGTTTCTGGATTTCATGGTGTTATGTTTAACAGGTGTTTGGCCTCAGGACCACTTCCACttttacaataaaaagaaaataaaaagtatggttttattttttactttctggTTTTAAGGGATAATACACTGGCTTTACTCACTTTACGCTGTCGATGAGGGCTCACAAGTTGTTAAGCAAGTAAGAACTagaacaaaagaaagcaaaatattcAGTTCCTCTTGCTCAGTGGTCTCAGTCTTTATTCACTTAATTTAGTGATCATTTTTTAGACAGCCACTGCACCAGTATTTATGAATCCATGTTCACAAGCCTTTAAATTAGACCAGTGATAATTCTCAGTTTACAATCGGGTcacagatttcaaaacaaaaagcttcTAATATTCTGGCCTTCATATTTAAATGTCCATTTTAACACAAGTAGTGGGAGTAGTCTTAAAGgttattaaattaagtatatttCATCCTTGAAATAAAGAATTACATCTCAACAGTATAATGATTGGtgactttaatttcaaaaacCAAAATGTTACAGAGATTACAATACATCTTTAATGTTTAGGTCAGATATAGCAGACAACATAACCTAAGAGTATAACATTCCTGTTTACATGTTTCAGTACTACTCATGCAGcatgcatttaaagaaataaattaaatgaataatgaagaCATAGAATTAAGTTTTGGATATGTTGACAACACATATTTCAAGAGCTCAGATCTACAGTATGGTTATAACTGATGATGGTACATTTTAGAGtaagaatacaaataactgTTAGTAGCAGCCTGCTATGGGGCATTGTCAGATTGTAGATTATTGGCAGATTAGCAGCCCCTCGCTGGGTAAAAAGGGTGCCAGCCAATCCACAATCTGACAATGCATGTTAACCTGGTTTCCATCTGCAGATACTCAAAGGTGAGCCAAGCCGGACACATCCTGGGGAAAACAGAGACGCGAGACTCCAGCTGCAGTTTGCGCCACTCAAGAGATTTTATTTGTTGGCATTTTAACCCATGTACTTCAAACACTCAGAATCTTTTTTCCCCTACTATGGGCAAACTACCTACTGCATAGTCAATTAATTATATGGGCAGTTTGCTCACAGTGGAAAACATGTCTCCTGACCTCTTGATAAAACAATCGCGGTCTGTATTCATCAGTGGATTCAGAGACCCTCATAAGCCTTGGACTCAGTGGTCTCATATACCACCAACATGCAGGTAAACCCAGCTCGTGTTGCCCATTTAATGAGTGTTTCTTTGAGCTTCTTTGCATTGACTTTCATTTCCACAGATCTAGGCACTTCCTGTGAGCTTAACTTCACTGCTGGTGGTCTAGCGAGTGTCTACTTAAGCTCACACTAAGATCCTGAATGACTCAAACTACATGAGGTGGAGTCTCATTCCCATGAatattatttgattgattttaatagTGCCCCAATCTCATTTgcgatatatattttatacatcacCTCACTTCAACATTCAAAATAGTGCAGCTCACCCACTTCCATCTTGTTTAGACATTTCCTTCCTTTTCCTGTTAACACAAGGAACTGAAGAGCGGGATCTTTTTAAAGACCCTCTACACATTTACATCCCAAAGACCGGAACCTAGGGTTTTTCTTTGCCCCCGTCCCTTCGGACATTCCCCTTGACGTTCTATCTTGACAGCCTGTCTGGTTACTTTCCTTCCTGTGCTCCCTCATGCCAACTCCTCTGCCTCCTGCACCACAGGGACCCTCTCATACAACTGTTGCCCAACTCTCTTGCACTGCCACATTCCGTACCTTTTACCTCCGATATGAAAGTGTGAACATTTGGACTCCCTAATAAGCCTGGTCAAGGACTCATTTCTCACTGGGCAGTTGTGTATCGCCCATCCGCTCCCCACCCCTTCCCTGCTGCCCCCTGACCCTGCTGTTGCCACTGCTGCTACCGCTCTCACTCGGACCCTCTTTTCGTGAcactttttgcatttatttcatgGTCTCCAGCCTCGTGATGGAGACGGCCGCTATGGGAATGCTGTGCTCTAGGACTTCTTGGTATTGACCAGCTTCTCGATGAGCGCCCTCCTGGTGTGCTGGACCTCCTCACTCAGCCGCTCGATCTCAGCCTTCAGGCGCTCATTCTGCTCCGTCAGCTCCACCACCCGCCTCTCGTTCTCCAGCTCGCGTTCCTTCCTGCTCTTCTTGGGTGCCCCTGCTCCagatggagaggaggaggaggaggagggagagaaagaggaggaggaagagggtgTGCTTCTCTTGCGCTTGTGAGCCACCCTGCCCTGGGAGCCCACGCTGGACGGGGGCGACTCAGGGGCCGAGGGCAGCTCCTCTTCACTGGACAGCAGTGAGGGGTCGAGCCCGTTcctctccccttccccttccccttccccctcgccctcctcctcctcctcctcctcctcctcttcaggCAGCTCCTGGAGACAGCCTACGATCTCGATCACCC

Function

GO: NA

KEGG:

id description
K01874 MARS, metG; methionyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64337 lncRNA downstream 77558 11226487 ~ 11258218 (-) True G51403
TU64280 lncRNA downstream 171402 11163346 ~ 11164374 (-) True G51354
TU64261 lncRNA downstream 195503 11057690 ~ 11140273 (-) False G51344
TU64527 lncRNA upstream 654365 12002925 ~ 12010394 (-) True G51574
TU64548 lncRNA upstream 732652 12081212 ~ 12093785 (-) True G51588
TU64607 lncRNA upstream 994580 12343140 ~ 12343342 (-) True G51634
TU64648 lncRNA upstream 1090191 12438751 ~ 12439523 (-) True G51674
TU64668 lncRNA upstream 1106359 12454919 ~ 12476199 (-) True G51693
AMCG00008777 mRNA downstream 11063 11294413 ~ 11324713 (-) True AMCG00008777
AMCG00008773 mRNA downstream 85539 11233492 ~ 11250237 (-) True AMCG00008773
AMCG00008772 mRNA downstream 114518 11210186 ~ 11221258 (-) True AMCG00008772
AMCG00008766 mRNA downstream 163848 11150919 ~ 11171928 (-) True AMCG00008766
AMCG00008767 mRNA downstream 192415 11134186 ~ 11143361 (-) True AMCG00008767
AMCG00008780 mRNA upstream 59109 11407669 ~ 11417859 (-) True AMCG00008780
AMCG00008779 mRNA upstream 112644 11461204 ~ 11474304 (-) True AMCG00008779
AMCG00008781 mRNA upstream 199451 11548011 ~ 11551118 (-) True AMCG00008781
AMCG00008785 mRNA upstream 366102 11714662 ~ 11728170 (-) True AMCG00008785
AMCG00008786 mRNA upstream 398512 11747072 ~ 11754413 (-) True AMCG00008786
TU64350 other downstream 9417 11320810 ~ 11326359 (-) False AMCG00008777
TU64340 other downstream 40026 11235642 ~ 11295750 (-) False AMCG00008777
TU64128 other downstream 536622 10797632 ~ 10799154 (-) True G51250
TU64119 other downstream 617575 10677263 ~ 10718201 (-) False AMCG00008748
TU64811 other upstream 1542251 12890811 ~ 12891597 (-) True G51797
TU64813 other upstream 1546775 12895335 ~ 12897134 (-) True G51799
TU64897 other upstream 1652266 13000826 ~ 13001888 (-) True G51867
TU64926 other upstream 1741977 13090537 ~ 13097934 (-) True AMCG00008845
TU65001 other upstream 1909146 13257706 ~ 13261822 (-) True AMCG00008853

Expression Profile