RNA id: AMCG00008777



Basic Information


Item Value
RNA id AMCG00008777
length 5265
RNA type mRNA
GC content 0.62
exon number 17
gene id AMCG00008777
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 11235642 ~ 11326359 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGTGAGAGTCCCCATGCATCAGTTCAGGCTTTGGGGAAAGGCTGCAAAGCGGTTCTCCTCCGACAAGCCAAGGGGCAAGTTCACCTGCTGGTTTCTGCAGATGGTGGAGTGTTGGGCATCTACGCACAAAGCCTTTCTCACTCTGCGAGGTTCCGACTGGTTGAAGTGTGCAGCATTATGGATGAGCAGATGGATATTACTAGGTCTGATCTTCTAAGATATTTGCACTGGTTCCCCCTGAGAACAAGGAATACAGTTGACAGCctagaaaagaagaagaataagaagaagaagagagaCCCCAGCGGGACAGTCCTGTCCTCGGGGGAAGAGGTGAGGACATACCTCCTGACTGACGGCACTTGTAAGTGTGGTCTGGAGTGTCCGCTGGTCGTACACAAGGTGTTCAATTTCGACCCAGGGGCAGCAGTTCGGCCACGAAGCTCACAGGAAGTGAAGGCAGAGGAGGACATGACCAAACTCTGCAACCACCGGCGGAAAGTGGTGGCGATGGCGGCGCTGTGCCGCAGTATGGAGGTATCCCAGCTCTCTCTGCCCACGCATACCCCTGGTGGCGCCTACAATCACCTGGAGCCGCCtgtgcagctgcagtgcagggcCCCCCAGGGGAGCCAGAGTAAGGTAGAGCCCCGGACAGACATCTTCCCCAGCCTGCGGGCGGCTGAGAGAGCCGGTAGTGGGCATGGGGGGGGGCCCTTGCCAAGTGTCCGGGAGGATGGGGGCCACTGCACTTATACTCGCCAGAGACTGTCCAGCCTGCCCACTCCCCCTGCCAGTCCCAGCCTGGCCACACCTGGGGGCGGGAACCCCCCGGGGCACCCCTCGCTTCTCTTCCCTTCCAATGGGTCCTTGCCCCGGAATAACTCCCGGCTGTCTCCCGAGCTGGGCAAGAAGGGCCGCATACCTTCTCCGGCCCGCTCTCCCTTTTCCTGCTTCAGTGGCCCAGCCCAGACCCAGAGGTACTCCCGGCCCCAGACCCCGCAGAACCGgacacctgagccgcccagctCCCCACGCCTGGCCCCCCATGGTCTGGATAACCATGTCTCCTCTGCCTTGGCTTCTCTGGCAAACAGTCTAGGGGTGCGGCCTGTGCAGCAGGAGGTCCATTACAGTGGCAGTGCACTCCCACCGCACCtgccttccctctccctctctgcctccttcCCCCCAGCCCGAGCTCCCCACCCTCTCAGCAGCGGGTCCCCCTCTCCTTTCTCCAACTCTTTGTCCCCAGCTGGCAGTCTGGATGCCCCCTCCCCGCAGAGGTCCCGCCATTCTTCTGCCTCCTCTGAGCACAGCGTGGCTTATCAGGGCACCCCCCAGCCCACTGCCAAGCCCCTGTCCTCCCGCTCCCCAATGCCTGGAGGCAGCACAGTCTGCATCTCTGGTTCTGGCAGCCCCGGCTTCCTGGGTCTGCCTCTGGGCCAGCTGCTCAACCaacaccagcaccagcaccacgCAGCCTCCTTCCCGGCCAGCAGCCTGCTCTCTGCCGCTGCCAAGGCCCAGCTAGCCAGCCAGAAGAGCCCGAGTCCGAGCCAGAACCACagcggcggcggcagcagcaATACCAATAACTGTGCCAGTAAAGACGTCCAGTCCAAGGTACTGATCAGCACTTTACAGAGCAACCTCTCCAACAACAGGTCTCCCAGCGCTTTGCTCCTCCCACACTCCCCTTTGGCCCCTGCCGCCTGCCCCGTTTCCCCAAGGACCCCCCTTTTGTCTCAGGACAAGTCTTCCAGGCGCAAGAGGCAGCGGCGGTCACCCACGGTCCTTAGCATGCTCAAGGAGTCCCAGATGATCAGCCTGCGAACAGCTGGGGCAGACATGCCTTCTGCCTCCACCGAGAAGGCTatactctctctgtcctcttcCACTGCTAGCCTTCCCCTTACTAATCCTCCACCCCATCTCCTCCCACCAGCCTCCCCAGCTCTGGAGAACCACCTTCCCCATCAGTCTCTGGCACCTGCCACTCAGACTCCCACCCACACCCCAAGTCCTGGTTTCCAAGGGCCCAGGGAGCCTCAGGACCCCCACAGGAGGACCAGCACCCCTGGCACCACCCAGCCACTCTCTGCTCTTCTCCATCTGCTTAGTGTCCAGAGTTCAGCGCAGGTTCCTGCCAGCACGGTCCCGGGTgctccctctctgtcccacCTCTCTTCCTCGGCTGTCCATCCCGGGCCGGGGCAAACCCATTCCCAAGGTCAATCCGTGTGTCTGTCACCTGTTGTTTCCCAGAGCCATCCTCAGTATCACTCGCAAGGTCAATCCCTGGCTCACTCCCAAACTGCTTACCAGTCCCACCCCCATGCCTCGCAGTCCCTTTCTGGCCCCCACAACCAGCAACCTTCACTGTCACAGCCACAAACCTTTGTGCCTGGTTTTGAGGGCTCCTCCCCAGCCCCGTCTCCACAAGCATTCCCTCTCATCAGTGTCAGTATGAATGGCGACACAGGGTTGTGCCAAGGCACCACTCCTGATGCCACTCTGGGTCCACAAAGTAACCCCGGCCACAACCTCAACCCAAACCCCAACACTGGCATTCAAGATTTCAACAGTCACCTGCTGGGGCTTCTGGGACAACTGTCttcgtcctcgtcctcgtcctcttcctcctgtGCGGTGTCGTCTGGTGGGTCGAGCTCAGGGACTGCCGTTGTGACGTCAGTGTCTCCAACCCCCAGGAGCGGGACCAGcgattccatgtcaacaggagCCAGCAGCAACAGCTCCCCCACCACCAAGCCCCCTCCAGCCACCAGCCCAGGTCCAGGCCCCGCCTCGAACCAGGGGGGGCTCCCTAGCCCACTGCACCTGGCAGAGTCTTTCCCCTTCATGAGCCAGGagcagctcctccagctgctgTCAGCCAACTCAGGGCTGCCCTCACTGCTGAGCCCCCCATTCCTAGGGTCCCTGCCCCTGAACTTGTGGATGGGTGGGCAgcagacacagcagcagcaacaacagcaaggCTTGCTGAACCAGAGTTCCCAGATGAACCTGCTGCCTTCCATGCTGGGACCACAGGGGGACATGCCAGTCAATTTACTTGGCCTCCTGAACCCTCCGCCTCTCAGCGACCAGGCAGACAAGCAGGGGCTGCAGGCTCTTCTCACCGCCTCCTTGCTGCTTGGCCAGCACCAAGCCGCCATGCTGCCCCTGGCTGGGCTGGGGAATCTCAACCTGGAGCTgctcctccagcagcagcagttccCCCCACTGCAGGATGGTGCCGCCATGTCCCAGGCCCTGGAGAAACCCTCAGCCCTAGACACCCTCCTGTCTGGCCCCGGGGCCCTGGAGGCACTGCAGGGCCTGTCTCCTGTGGACGGTGCCCTCCAGGCCCTGCAATCCCTACTGCTCCCAGCACcccccctgcctccctctgcCTTCCTCTCCCTCAGCCCGGCCCTGCTGGCTGCAGCTTTAGGCTCGGCTGAGACCCCTGCACCCCAACAGCACACTCAGCTCTACCTCTGTGGCAAGTACCTGCACCACGATGGCACCCAGCACTGCCGGGGAGGGAGCAGACGCCCTCCTGCCCCTTGGTGGCCCTGGCAAGACCAGCCCCCTGCCCCCTCATCTCCTCGCACCCCTGCTGGGCACTGGGGTCTGAACATGGGTCCTGGCCTTCAGATGAGTGGTGACAAGCCAATCCACGCCTCTACCCAGCTGTCGGAGAACACCGCTCCAGAGGACGTTCCCACCAATCAGCTGGCCCCAGAGCCTGTGCCCAACCCAGGCCATGGCCCAGGGCCCCAGCAGCGCTCAGGCCAGCTGGACCCCTACAGCTCCTTCATGGACACCATTTACACCTCCTTCCTACAGGTCACTGGGAGGAAGGCCGAGGGGGGGACCTGTGGGGGCCAGTCGGGGGCTCTCAGTGCCTtaccctccccccctccctacCCCCAGCAACATGGGGATGGGACTTCCCTTCTGCCCCAGAACAATGGACCTCCCTCCCTCAGCCCGCGGCGTGCTTGCACCCTACGCCATCAGGACCTCTCCCGTTTAGGCATGGAGGCGGCCCAGTCCCCGGCTAGGGGCACCCCCAAACTTAGTGAGGATGGCTCCACACCACCTCCCCCCGGGGCTGTGCACAAGCCTGGGAATGGGAGAGGCCATTGTGACCCCCCCGTGGCCCCCACCTTCCCTGCCACCCTAGAGGAGGCGAAGACGGACTCCTCAGCCTGCCAGTACAGCAACGGTGTTCCTGCAGCCTGCGCTGGGGGGCTGGGAGGTGCCTCGGAGGAGGAGTCTGAGCGTGTGCAGGCCCAGGTTCCGTATGCTGGGCCCAGGGAGGCTGTGAACGGGGTGGCTGTGTCCCCCAGTGCCCAGCATGAGGACGGCTTGGGAGCGCCGAGCATACAGGAAGTCAAGgGGCAGGCTGTGCGGACGGGCGGTGCTAGGAGAGGTCGAAAGAGGAAGCAAACGCTGCAGAAGCTGCCCGGCGACCTGAGAGAGACGGACACTGTGAGCATGGCAGACCACAGGACAGCGATGGTGACTGGAGAAGAAGAAGTGTCGTGTACTCTGTGCTCTGATGTAATATTCTGTACATTGCAAAGATTAAGGCTGTTCAATCTCATTCCAGGTGGCCCATCAGAAGCTGGAGAGGTCAGTGAAGAACAAGAGGAGGAGAGTGCTCAGATAGCGCCTGCTGGGCTGAAGAAAAGACTGCCTGAAGTGAGTTCGTTCCCCAGGCCTGGCACTGTCTCCAGAGGGCCCTTCTGGTCAGCACGGGCCCTGCAGCTAAGCCACGGACAGACACACTGTGCAGGCCTTGCCCATAATTCCTCAGGTTTCTCCTGCTGCTGCCCGTCTCTCACTCCCCTGGCCCCTCTGCCACCACCCTTCAGCACCTCATGTGTCGTCATCCAGTCTGCTGCAGCTAGTCTACCCTGCCCAGGACAACTGACTGACAACGACACGCAAAAACAGGCAACgGTGTCCAAGCTGTACGACGTCATCCAGAAGTGGGACTCCATGGCCACCTCTCTCCCCCAGGTCGTGCAGAGGCTCATAGCAGTGAGGGAGCTGCACGAACAAGCCATGCAGTTCGGTCAGCTGCTCACCCACCTGGACACCACCCAGCAGATGATCAATAACTCTTTGAAGGACAACACCACCCTGCTCTCTCAGgTGCAGCAAACTATGAAGGAGAACTTGGCAGCTGTGGAAGAGAACTTTGCCAGTCTGGATACCAGGATGAAGAAACTCTCCAAA

Function


GO:

id name namespace
GO:0001754 eye photoreceptor cell differentiation biological_process
GO:0030719 P granule organization biological_process
GO:0060117 auditory receptor cell development biological_process
GO:0045494 photoreceptor cell maintenance biological_process
GO:0007017 microtubule-based process biological_process
GO:0035088 establishment or maintenance of apical/basal cell polarity biological_process
GO:0010001 glial cell differentiation biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0005869 dynactin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0030286 dynein complex cellular_component
GO:0031982 vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003774 motor activity molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU64337 lncRNA downstream 36195 11226487 ~ 11258218 (-) True G51403
TU64280 lncRNA downstream 130039 11163346 ~ 11164374 (-) True G51354
TU64261 lncRNA downstream 154140 11057690 ~ 11140273 (-) False G51344
TU64265 lncRNA downstream 234487 11057677 ~ 11059926 (-) True G51344
TU64527 lncRNA upstream 678212 12002925 ~ 12010394 (-) True G51574
TU64548 lncRNA upstream 756499 12081212 ~ 12093785 (-) True G51588
TU64607 lncRNA upstream 1018427 12343140 ~ 12343342 (-) True G51634
TU64648 lncRNA upstream 1114038 12438751 ~ 12439523 (-) True G51674
TU64668 lncRNA upstream 1130206 12454919 ~ 12476199 (-) True G51693
AMCG00008773 mRNA downstream 44176 11233492 ~ 11250237 (-) True AMCG00008773
AMCG00008772 mRNA downstream 73155 11210186 ~ 11221258 (-) True AMCG00008772
AMCG00008766 mRNA downstream 122485 11150919 ~ 11171928 (-) True AMCG00008766
AMCG00008767 mRNA downstream 151052 11134186 ~ 11143361 (-) True AMCG00008767
AMCG00008762 mRNA downstream 220822 11062287 ~ 11073591 (-) True AMCG00008762
AMCG00008776 mRNA upstream 11063 11335776 ~ 11348560 (-) True AMCG00008776
AMCG00008780 mRNA upstream 82956 11407669 ~ 11417859 (-) True AMCG00008780
AMCG00008779 mRNA upstream 136491 11461204 ~ 11474304 (-) True AMCG00008779
AMCG00008781 mRNA upstream 223298 11548011 ~ 11551118 (-) True AMCG00008781
AMCG00008785 mRNA upstream 389949 11714662 ~ 11728170 (-) True AMCG00008785
TU64128 other downstream 495259 10797632 ~ 10799154 (-) True G51250
TU64119 other downstream 576212 10677263 ~ 10718201 (-) False AMCG00008748
TU64811 other upstream 1566098 12890811 ~ 12891597 (-) True G51797
TU64813 other upstream 1570622 12895335 ~ 12897134 (-) True G51799
TU64897 other upstream 1676113 13000826 ~ 13001888 (-) True G51867
TU64926 other upstream 1765824 13090537 ~ 13097934 (-) True AMCG00008845
TU65001 other upstream 1932993 13257706 ~ 13261822 (-) True AMCG00008853

Expression Profile