RNA id: AMCG00008778


Basic Information

Item Value
RNA id AMCG00008778
length 2238
RNA type mRNA
GC content 0.61
exon number 18
gene id AMCG00008778
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 11369713 ~ 11392029 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGTCAGGCAGCTGGCGCAAGAATGCAGCACCCTCGCCGGCCAAGGGGGGCAGCGTTGTGCTGGAGGCGCAGTATGACTACTCGTACCGGGGGGCGGACGGGCGACAGGTGTCGATGTGCGAGGGCGAGCGCTTCGTTCTCTTGCGCAAAGCCAATGCCGACTGGTGGCAGGTGCGCCGCCTGAGCGCCCCCCCCAAGGCCAAGCCCATCTACGTGCCGGCCACCTACGTCACCGAAGTAAAGCCCAGCATTCGTCTGGTCCCCCGCACCTCCCTCACACCCTGCACACAGACGCAGTGTACAGTGAGCTCCAAAGTCTTCTGCCGCTCCATGGAAGACCTGAACTCCAACAGTTCCTTTCGAGGAGGGGTCGGGTCTGGGGCCCGCTTCCCCACACTGCCCCTCGCCGGACCCCCTTCCTCTGGACATTTCCTGGCTCCCCCCGGCCCCTCAGCTGCCGTACCCATGGCCCGAAGCAAGAGCTCCAGCATGCTGCCCCAGAACCCCTACCAGGAGTCGGGCGAGGAGGACGGGGGCAGCCCAGCCAGACACCCCCAAATCAAGTCTTACAGCCAGGGGGACATCGTGGAGGCCCCTCGCAGACACAGCCACATGCAGGTACACAACCTGGAGGAGGTGAAGCGGCGCCAGGCGGAGCCTCCCAGCCCAACCCAGCGGcccctgcagctgctggacCTGTGGGAGCAGCACCTAGACCCCACCTCGGGCCGCTGCTTCTACGTCAACAGCGTGACACGGGAGCGCTCCTGGAAACCCCCCCGTCGCGCCCGGGAGCGCACGCCCAGCCGGGCTAGTCCACTTCAAGGAGGAACATTCCCACGAGACTCAAACCACCTTTCGCCTCCAAATCAGGATTCTGGCAATGGCAGCATTtataagCACTCCCCGGATGCCAGCCCAGTCACTTTCATCTACAATGTGCAGGACGGGGACGGCGGCTGGGAGCTGCGACAGAACATCCAGAGGGCCGCTTCCTCCGACGCCCTGAACAGCGCTCCCTTCAGTCCCAGCGAGGCGCAGCTGCGCAACAGTAGTGTCCTGCTCAAGAGCGAGAGGCACAACCAGGCTCGCTCCATGATCTTCCCTGAGCTCAGCGACTCCAAGGTTGTCCAGCACCGGAGGAATCTGTCTCACCACATCCTGGGTGGGGGTGTGGAGCCCCCTTCCCCTGTTAGCTCCCCAGACAGCTCTGACAGCACCACACCGGAATTGGAAAAGGCCGGGTTGCTCAATAAAACTAAGATTGCCGAAGGGGGCAGAAAGCTAAGGAAGAACTGGAATCCCTCGTGGGTGGTGCTGGTGGGGAACAGCCTGGTCTTCTTCAAGGACCCCAAAGCACAGACACCCTCCAGCTGGCTCCGCACGGTCACCGGGAATGAGTTCCTGCTGCACGGAGACGAGGACGAGTCCCGATCTGGACGCAAATCCTCCTTACCCCGCTCCACTTCCAACCTGGAGAACTCGGAGAAGAAGCGCGTGAAGAGCCGCCTCAAGAAGCTGATCCTGAAGAGACCCCCGCTGCAGGCCCTGCAGGAGAAGGGGCTGATCAAGGACCAGGTGTTCGGGTGTCGACTGGATGCGCTGTGCGAGCGGGAGAAGAACACGGTGCCCAAGTTTGTGCGGATGTGTACCGAGGCCGTGGAGAAGAGAGGGCTGGAGGCGGATGGGATATACAGGGTGAGCGGCAACCTGGCGGTCATCCAGAAACTGCGCTTCATCGTGGACCACGAGCGAGCTGTGACCACAGATGGCCGGTATTTGTTCCCTGAGGAGCGGGTACAAGAGGAGAAGCTGAACCTGGATGACAGTCAGTGGGAGGACATCCACGTTATCACCGGAGCACTCAAGATGTTCTTCCGGGAGCTTCCGGAGCCGCTTGTCCCCTATGGGTTCTTTAACGACTTTGTGGAGACCGTCAAAATCCCCGATTACCTGGACAGGCTGACCCGGATGAAGTGGCTGGTGCAGAAGCTGCCGCCCCCCAACCACGACACCATGAGGTTCATCTTCACACACCTGAAGAGggtgAACGAGCACTCGGACACCAACCGCATGACCACCCAGAACATCGGCATCGTGTTCGGACCCACGCTGATGCGGCCGGAGAGAGACTTCACCAACATGGCTGTCAACATGGTCTACCAGAACCAGGCCGTGGAGCTCATTCTTAGCGAGTACGAGCACATCTTTGGCCCAGAGAGAGACTTTCTCTGA

Function

GO: NA

KEGG:

id description
K19844 BEM2; GTPase-activating protein BEM2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64205 lncRNA upstream 312277 11020216 ~ 11057436 (+) True G51298
TU64199 lncRNA upstream 329039 11038341 ~ 11040674 (+) True G51297
TU64202 lncRNA upstream 345693 11020216 ~ 11024020 (+) False G51298
TU64180 lncRNA upstream 416293 10951077 ~ 10953420 (+) True G51283
TU64158 lncRNA upstream 459068 10867935 ~ 10910645 (+) True G51265
TU64385 lncRNA downstream 73783 11465812 ~ 11466083 (+) True G51446
TU64432 lncRNA downstream 302625 11694654 ~ 11704413 (+) True AMCG00008784
TU64429 lncRNA downstream 320683 11712712 ~ 11716482 (+) False G51483
TU64430 lncRNA downstream 320683 11712712 ~ 11716482 (+) True G51483
TU64537 lncRNA downstream 670045 12062074 ~ 12062289 (+) True G51582
AMCG00008775 mRNA upstream 33492 11331875 ~ 11336221 (+) True AMCG00008775
AMCG00008774 mRNA upstream 78413 11279912 ~ 11291300 (+) True AMCG00008774
AMCG00008771 mRNA upstream 171961 11189422 ~ 11197752 (+) True AMCG00008771
AMCG00008770 mRNA upstream 180557 11183217 ~ 11189156 (+) True AMCG00008770
AMCG00008769 mRNA upstream 217150 11144022 ~ 11152563 (+) True AMCG00008769
AMCG00008783 mRNA downstream 175829 11567858 ~ 11599637 (+) True AMCG00008783
AMCG00008782 mRNA downstream 210386 11602415 ~ 11618855 (+) True AMCG00008782
AMCG00008784 mRNA downstream 302812 11694841 ~ 11704408 (+) False AMCG00008784
AMCG00008787 mRNA downstream 441257 11833286 ~ 11834344 (+) True AMCG00008787
AMCG00008791 mRNA downstream 590749 11982778 ~ 12002806 (+) True AMCG00008791
TU64201 other upstream 329039 10984890 ~ 11040674 (+) False G51297
TU64057 other upstream 662620 10705478 ~ 10707093 (+) False AMCG00008749
TU63913 other upstream 1438632 9929478 ~ 9931081 (+) False AMCG00008727
TU63914 other upstream 1438632 9929478 ~ 9931081 (+) False AMCG00008727
TU63745 other upstream 2053562 9310086 ~ 9316151 (+) True AMCG00008710
TU64384 other downstream 68334 11460363 ~ 11465488 (+) True G51445
TU64730 other downstream 1323465 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 1450686 12842715 ~ 12846233 (+) True G51756
TU64826 other downstream 1533209 12925238 ~ 12926794 (+) True G51812
TU64845 other downstream 1588775 12980804 ~ 12992492 (+) True AMCG00008837

Expression Profile