RNA id: AMCG00008782


Basic Information

Item Value
RNA id AMCG00008782
length 2497
RNA type mRNA
GC content 0.46
exon number 11
gene id AMCG00008782
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 11602415 ~ 11618855 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acacacacacacacactcacacccacaccCTGCATGTCCGGATAACACACCCGGATCTACAAGCTCGGTAAACCCTCCCCTTTACTGGAACAGCCCTTTGAAAGTATAGaagaagaaaggagaaaaaaaacaaaaaaaacaaattgcccCTCATTCTCGCCTGATCCTACTCTTTGTGCCTTTGGAAGTGCCGTGTGCATGTCTGTTCCCTGGATTCCTGTCTGTGACCATCCTTGGTTCCATCGCACAGTAGAAGTCCTAAGGAGCAGAGAAGAAACAAATTCTTGCAGAACCGTGACAGAAAAGATTGACTGGTTGCCATGGCACAGTATGACCAaatgaGCGACAAAGAGTCCCTGGATCCTCACGACATGATTCCGGCTGCTGGCGAGAATGAAGTCGTTTACTTTGTCTAtgaagaggaggaagatgacGATGAGGAAGAAAAACTGGAAGTCCCACCTGAGCCAGTCAAACCGGTCAACGACAAGCCCCATAAGTTCAAAGATCATTACTGCAAGAAGCCCAAGTTCTGCGACGTCTGTGCCAGGATGATCGTCCTCAACAACAAGTTTGGCTTGAGGTGTAAGAACTGCAAGACCAATATTCATCACCACTGCCAGTCCTATGTGGAGATGCAGAGGTGCTTTGGCAAAATCCCTCCAGGTTTCCGCCGTGCCTACAGCTCCCCCCTCTACAGTAACCAGCAGAATGCCTGTGTGAAAGAGTTGCTGCCCTTCTCCCAGTCCAATCGCACTGACCCAGTGTTTGACACCCTGCGCGTCGGGGTGGCCATGGCCAACAAGGAGAGGAAAAAGGGCTCCGATGACAAGAAGAATAATAAGAAGGCCCAAGCCGGGGTGAGGCCAGGCTTCACACAGTCACACTACTACATGGCCCTGTACCGATTCAAAGCCCTGGAGAAGGATGACCTGGACTTCCACCCCGGAGACAGGATCACAGTGATAGATGACTCCAACGAAGAGTGGTGGAGGggaAAGATCGGTGAGAAATCAGGCTATCTGCCAGCAAACTACATCATCCGTGTGCGTGCTGGGGAAAGGGTGTACAAGGTGACCAGGTCATTCGTGGGAAACCGAGAAATGGGCCAGATCACTCTGAAGAAAGACCAGATTGTCGTGAAGAAGGGTGAGGAAGTCAACGGTTACCTCAAGGTCAGCACTGGGAGGAAGCTGGGCTTTTTCCCTGCTGACCTGCTTCAGGAAATTTGAGCTGCACTGGATCTGAAATCCCCTGGTACATCTCTCTGCCAGCCCCTGTCCTTCCCCACCCCCATCGCCACTGCTCCCTCCCCACCACCCACAAACAGGAGAGGAACTCAACCGGCCCCACAATGGACAGATTGGACAGATGGACACTACAGTTCTGGTGAACCTGGTGCACCAAAACTACTGAATTTTCTAAACGAAAAGGATCACAGTGGGCAATCTTCAAATTGAGTTCTCTTCTGGTTTTCCTTTCAGTCTGAGCTCTGAGAATTAGTCCATTTGGCTGATTTTGAATCAAGTAATCGACTGAACTGATTGTTCACTTAACCGCACCCCTTTCATGAAACCAAAGACTTGGTTCCAGCACTTCCTATGAAAGAGTATCTGAGGGTTTTTAATCGGGGGAGAAAAACTCAACTCAGATGAATACACCAGTGTCCAACAATGTACACAGGTCTCGTAAAATTCCCATTTATTCAGCAAATAGGGTTACGGGAAGAGATCATGAACAGTCTCTGCAGAACATGTTCTTTAGGATTTGTGGACTGCACTGGGAATTGACTAGTTTGAATTCATTTTCTCACCAGGAGATGCTGTGGTTTTGATTTTAGTTCCTCACCCCGTcatagtgattttttttctcttcccaaTTGTATGTGAGAACCTTTCTACGAGATGCTGGTTTCGTCCCACCTGCGATGTTGGTGTCATGCTCCAGAAGCAGTGTGACACTTCCATCTTGAGTGGCTGCAGGTGCCGGCTGTGTGTGAGGCACAGTGAGTGGCCCTCTCTTAAAAATGCTATGTTATAtgctaataaaacacaattataaacgTTAGCCACTGAAATCATGGTTCATGatgtaacacacacaacaattgGTTGCTGCAgttgtatgatttttttcttgcatACAATTATAAGATCCCTTCAATGTTAAGGTCATTTCTTCAGCAATGAGTTCCGTTGTTGTCAAAGCTGTATGCGGCACAATGGAAagtcttcttttttaaaaaaaaaatgtggtccCGCTCTTTATATTCCTACGTATCCAAAGCAGATCTATCCAGTTAGGATCTAGATCCAGATTAGGGCTCTATTACATGGAAGTCAATATGCTAATTAAGGGGAAAGCTGCTATTTCATACTTGCATTTTTCAGTAGTTAGTGTTTTACCTAACTGGAGAGTTCCTAAAGcttattttaatgaactgaTGAATTGGAAATAAAGACAattgggtattattattattattattattattatt

Function

GO:

id name namespace
GO:0007519 skeletal muscle tissue development biological_process

KEGG:

id description
K23713 STAC3; SH3 and cysteine-rich domain-containing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64385 lncRNA upstream 136332 11465812 ~ 11466083 (+) True G51446
TU64205 lncRNA upstream 544979 11020216 ~ 11057436 (+) True G51298
TU64199 lncRNA upstream 561741 11038341 ~ 11040674 (+) True G51297
TU64202 lncRNA upstream 578395 11020216 ~ 11024020 (+) False G51298
TU64180 lncRNA upstream 648995 10951077 ~ 10953420 (+) True G51283
TU64432 lncRNA downstream 75799 11694654 ~ 11704413 (+) True AMCG00008784
TU64429 lncRNA downstream 93857 11712712 ~ 11716482 (+) False G51483
TU64430 lncRNA downstream 93857 11712712 ~ 11716482 (+) True G51483
TU64537 lncRNA downstream 443219 12062074 ~ 12062289 (+) True G51582
TU64539 lncRNA downstream 456633 12075488 ~ 12077513 (+) True G51584
AMCG00008783 mRNA upstream 2778 11567858 ~ 11599637 (+) True AMCG00008783
AMCG00008778 mRNA upstream 210386 11369713 ~ 11392029 (+) True AMCG00008778
AMCG00008775 mRNA upstream 266194 11331875 ~ 11336221 (+) True AMCG00008775
AMCG00008774 mRNA upstream 311115 11279912 ~ 11291300 (+) True AMCG00008774
AMCG00008771 mRNA upstream 404663 11189422 ~ 11197752 (+) True AMCG00008771
AMCG00008784 mRNA downstream 75986 11694841 ~ 11704408 (+) False AMCG00008784
AMCG00008787 mRNA downstream 214431 11833286 ~ 11834344 (+) True AMCG00008787
AMCG00008791 mRNA downstream 363923 11982778 ~ 12002806 (+) True AMCG00008791
AMCG00008798 mRNA downstream 494529 12113384 ~ 12126602 (+) True AMCG00008798
AMCG00008795 mRNA downstream 513631 12132486 ~ 12143358 (+) True AMCG00008795
TU64384 other upstream 136927 11460363 ~ 11465488 (+) True G51445
TU64201 other upstream 561741 10984890 ~ 11040674 (+) False G51297
TU64057 other upstream 895322 10705478 ~ 10707093 (+) False AMCG00008749
TU63913 other upstream 1671334 9929478 ~ 9931081 (+) False AMCG00008727
TU64730 other downstream 1096639 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 1223860 12842715 ~ 12846233 (+) True G51756
TU64826 other downstream 1306383 12925238 ~ 12926794 (+) True G51812
TU64845 other downstream 1361949 12980804 ~ 12992492 (+) True AMCG00008837
TU64968 other downstream 1603465 13222320 ~ 13224946 (+) True G51928

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_18871236_18880189.mRNA True 1315 mRNA 0.45 12 CI01000340 18870944 ~ 18880189 (-)