RNA id: TU64432


Basic Information

Item Value
RNA id TU64432
length 1418
lncRNA type sense_over
GC content 0.43
exon number 4
gene id AMCG00008784
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 11694654 ~ 11704413 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaATAAACGAATTATGCGACTGCGCCCCCTCAGGCTTCATCCCAGTGTCTATGCAACAGGTTTCAGAGAGCGCACTCTCCTAGCATGAAACCTGTATCATTTGGTGGAGGAAACCGTTAAACATATATCGATACATTTGtataacaaactttttttttttttttaaatcatactaTCAAAGCTGAATTTGAACTGaaacatatttgtttcattttggatTTGACGAGACCGGaacaaacaaacccaacatTATGATTCGTGTACTAGTTCGACAAGCTAAGAAGAAACCTGGACTCATCcccctcttcttcttcatcaGCCTGGGGATGGGCGGGGCCTCCCTCTATCTGCTCCGCCTAGCCTTCTTCAACCCCCACGTCTGCTGGGACAAGAAGAACAATCCCGAGCCCTGGAACAAGCTGAGCCCAACCTATCAGTACAAGTTTGTGGCCGTCAACACTGACTACAAAAATCTGAAGAAGGATGGGCCGGAATTCTAAAGGTTTCCACGGCAACTCGCAAGTGCACCTCACTTCAGGGGCCTCCCGGTCGTCATGGTGTCAGAGTGGCTCAGCCTCACTCTGGAGAAGAgtctctctcctttttctctctctctcttgtgctTTAATTGCATGCAAAGTGCCTAACCTCGTTCAGCGCCTGGATTACATTAATACTGCGGATCATGATAATACTAACACGTGGGGGGTTGAAAGTTTTGATCTAGAACGTAGAATAGAACTCTGTTCCTCTTGCACGGAACCATAGAACACCCGTTTATATATTCCCTCTGGTCCAGTGCTAGTAGCTATTTCAACTGCTGTTATTGGGCTCACAGTGTTACTAGTCTATTAGCACTTAACCAAAGGAAATGTATGTAGCAGTGCTCTATAGCAGTGGATCtcaactctggtcctggaggagcctcTACCCAGCTGTTTTTGGTTCCAACCGAGCCCCcaattacttcattgaacccttaatttaagtaataatgtcctaaatcagaaccttttaaatattttaaacagtaggggttaagtataaaattgtatcgGAACATAtaatcttattaaggaaccagctttttatcagttacacaatttaaagagtgaaaagtaatcaaattattacttcaattaaggattcaattaaataattgagagctgggttggaacaaaaaccatcagggtagggggtcctccaggacaaCTGCTCTATAGCATCTGGAAGTCATTGGGAGCATGGCGTTAGCTTTTATGCATTCAATCTGATCTAGCtgcaaaagacaaagcaaaaataGGGAAAATCTTTACGGATTTATGGACTCTGCGCAAGTGGTGCTGGAATGGGGGTCCTATGTCAGACCTTTGTAAAAGTGTAACTCctgaataaaatgtgtgtgaacTTGAACCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64385 lncRNA upstream 228571 11465812 ~ 11466083 (+) True G51446
TU64205 lncRNA upstream 637218 11020216 ~ 11057436 (+) True G51298
TU64199 lncRNA upstream 653980 11038341 ~ 11040674 (+) True G51297
TU64202 lncRNA upstream 670634 11020216 ~ 11024020 (+) False G51298
TU64180 lncRNA upstream 741234 10951077 ~ 10953420 (+) True G51283
TU64429 lncRNA downstream 8299 11712712 ~ 11716482 (+) False G51483
TU64430 lncRNA downstream 8299 11712712 ~ 11716482 (+) True G51483
TU64537 lncRNA downstream 357661 12062074 ~ 12062289 (+) True G51582
TU64539 lncRNA downstream 371075 12075488 ~ 12077513 (+) True G51584
TU64544 lncRNA downstream 374284 12078697 ~ 12080204 (+) True G51586
AMCG00008782 mRNA upstream 75799 11602415 ~ 11618855 (+) True AMCG00008782
AMCG00008783 mRNA upstream 95017 11567858 ~ 11599637 (+) True AMCG00008783
AMCG00008778 mRNA upstream 302625 11369713 ~ 11392029 (+) True AMCG00008778
AMCG00008775 mRNA upstream 358433 11331875 ~ 11336221 (+) True AMCG00008775
AMCG00008774 mRNA upstream 403354 11279912 ~ 11291300 (+) True AMCG00008774
AMCG00008787 mRNA downstream 128873 11833286 ~ 11834344 (+) True AMCG00008787
AMCG00008791 mRNA downstream 278365 11982778 ~ 12002806 (+) True AMCG00008791
AMCG00008798 mRNA downstream 408971 12113384 ~ 12126602 (+) True AMCG00008798
AMCG00008795 mRNA downstream 428073 12132486 ~ 12143358 (+) True AMCG00008795
AMCG00008800 mRNA downstream 525114 12229527 ~ 12235458 (+) True AMCG00008800
TU64384 other upstream 229166 11460363 ~ 11465488 (+) True G51445
TU64201 other upstream 653980 10984890 ~ 11040674 (+) False G51297
TU64057 other upstream 987561 10705478 ~ 10707093 (+) False AMCG00008749
TU63913 other upstream 1763573 9929478 ~ 9931081 (+) False AMCG00008727
TU64730 other downstream 1011081 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 1138302 12842715 ~ 12846233 (+) True G51756
TU64826 other downstream 1220825 12925238 ~ 12926794 (+) True G51812
TU64845 other downstream 1276391 12980804 ~ 12992492 (+) True AMCG00008837
TU64968 other downstream 1517907 13222320 ~ 13224946 (+) True G51928

Expression Profile