RNA id: AMCG00008787



Basic Information


Item Value
RNA id AMCG00008787
length 1059
RNA type mRNA
GC content 0.63
exon number 1
gene id AMCG00008787
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 11833286 ~ 11834344 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTCGTATTCTAACAGCTCCTGTGTCGAGAACGGCACAGCCTACCCAGAGGAGACCAACATGGACGTCAACATCTCGCAAATAGTGGTGCCCGTGCTGGACGCCCTGATCCTGGCCACAGGAGTGGTGGGCCATTCCCTGGTGGTGCTGATCCTGACCCGGAGGCGAAGTAGCAGCCAGCGTCGCCACGGCACTGACACCCTCCTGCTGACACTGAGCGTGGCTGACCTGCTGCAGCTGGCCTGCCTACCCTTCAACACGGCCGCCATTGCAATGGGGCGCTGGCCCTTTGGCATCGTCCTATGCAAGATGATCAGCTTCCTGGGTGTGGCCTGCTCGTCCACCAGCGTGTTCACCCTGGCCGCTCTGGCAGTGTCCCGCTACCTCACCGTGGTGTACCCGACCTGGGCATACCGGTCCTGGCTGAACAGACACAGCTGGGTGACGGTGGCGGCACTGTGGCTTCCCACAGTGGCCCTGGCCTCGCCCCAGTTCGTGTACCGCACCGTGCGCTCCGGCAGTGCCGTGTACTGCTTCGCCTTCCTGTCCGACGTCAGCCAGCTGGTGTACGGAGCCGCCCTTTTCCTGTTCGGCTTCGTCGTGCCCCTGGCCATCATCGTGGTCATGTACGGCCGCCTCTACAGCTTCCTGCGGCGCACGCGTCAGGCCGGCCATGCCCCCCAGCTGGAGCGCTACCAGAGCCAGGTGACACGCACGTCGGCCCTGCTGGTGCTGGTGTTCACAGTGTGCTGGCTGCCATCCTACGTGCTCATGTTCTCGCTGGTGGGCTACACCTTCAGCGAACACAGCTACCATGCCTTCCCCATCTTCGCACGGCTGCTGGCCTGCTCCTCCACCGTGACCAACCCCATCCTGTACGTCTTCATCTCCGGCAAGTTCAGGAAGGACCTGGCGTCGCTGGCTGGCCGGGGGAGGGGGTGTGGTTGCTGTGGTTGCCCCGAGTGGGGCAGGGACACTGTCAATCCCTTAAACTCTGTGGAACTGCGATCCCCCCCTGCAATAGGAACACGGTCATTGTGCCCCCCCGCCAGCCCATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU64429 lncRNA upstream 116804 11712712 ~ 11716482 (+) False G51483
TU64430 lncRNA upstream 116804 11712712 ~ 11716482 (+) True G51483
TU64432 lncRNA upstream 128873 11694654 ~ 11704413 (+) True AMCG00008784
TU64385 lncRNA upstream 367203 11465812 ~ 11466083 (+) True G51446
TU64205 lncRNA upstream 775850 11020216 ~ 11057436 (+) True G51298
TU64537 lncRNA downstream 227730 12062074 ~ 12062289 (+) True G51582
TU64539 lncRNA downstream 241144 12075488 ~ 12077513 (+) True G51584
TU64544 lncRNA downstream 244353 12078697 ~ 12080204 (+) True G51586
TU64579 lncRNA downstream 356389 12190733 ~ 12249909 (+) True G51614
TU64639 lncRNA downstream 591589 12425933 ~ 12426222 (+) True G51665
AMCG00008784 mRNA upstream 128878 11694841 ~ 11704408 (+) False AMCG00008784
AMCG00008782 mRNA upstream 214431 11602415 ~ 11618855 (+) True AMCG00008782
AMCG00008783 mRNA upstream 233649 11567858 ~ 11599637 (+) True AMCG00008783
AMCG00008778 mRNA upstream 441257 11369713 ~ 11392029 (+) True AMCG00008778
AMCG00008775 mRNA upstream 497065 11331875 ~ 11336221 (+) True AMCG00008775
AMCG00008791 mRNA downstream 148434 11982778 ~ 12002806 (+) True AMCG00008791
AMCG00008798 mRNA downstream 279040 12113384 ~ 12126602 (+) True AMCG00008798
AMCG00008795 mRNA downstream 298142 12132486 ~ 12143358 (+) True AMCG00008795
AMCG00008800 mRNA downstream 395183 12229527 ~ 12235458 (+) True AMCG00008800
AMCG00008799 mRNA downstream 402287 12236631 ~ 12237359 (+) True AMCG00008799
TU64384 other upstream 367798 11460363 ~ 11465488 (+) True G51445
TU64201 other upstream 792612 10984890 ~ 11040674 (+) False G51297
TU64057 other upstream 1126193 10705478 ~ 10707093 (+) False AMCG00008749
TU63913 other upstream 1902205 9929478 ~ 9931081 (+) False AMCG00008727
TU64730 other downstream 881150 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 1008371 12842715 ~ 12846233 (+) True G51756
TU64826 other downstream 1090894 12925238 ~ 12926794 (+) True G51812
TU64845 other downstream 1146460 12980804 ~ 12992492 (+) True AMCG00008837
TU64968 other downstream 1387976 13222320 ~ 13224946 (+) True G51928

Expression Profile