RNA id: AMCG00008790


Basic Information

Item Value
RNA id AMCG00008790
length 792
RNA type mRNA
GC content 0.57
exon number 9
gene id AMCG00008790
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 11908698 ~ 11921938 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCGGGGGTGGGTTTTCCTCACTCCCTGGTGCGTTGTGCAGCAATCCTGGGTCAGACAGCCCTCAGGATGGGCCAGCGGCCGTGGTTCAGACACGCGGCACGGTCCAGCGACAGCTTAGAATAGGCTCTGACCCGCAGAATCAGTTTGTGTTCGTCAGCAAGGTGGTCTGTTCACAAGGTGTCGGCCTCATATGTTGGAGACATGTTTCCCACCACAACTGGCCATTTGAAGACCTGGGGCAGCGGCTGGGTGTTGGGGTGTCGGGAGTTCTGAACACTCCCCCTCCAGCCCGACTCTTCCCCCACCGCCTCCTCTGGCAGCTGAGCTCCATGTGCCAAGTTGAGTGTGTAAATGAAACCACAGATAAGAAGGTGACGGGAGCCAGAGCCTGCGGAGAGCAGCGGGCCTGGGGAGGGACGCTCGTCTCCTGTCTGAGCGAGACTCGGCTCGTTCCCATGCCAGTGCAGACTGgttttgaaATTTGTGACATCACAGTTTCCATGCTGTTTGTGCCCGCAACGTCCAGCTTTTGCTTTCCAAACTTCGTTACCCCAGAGGAGAGAACTGGGGTTCTCGAGCGCAGTCTCCCCTTTCAGGCTGTTCTTGATCCCGGGTGCACCAGAGATGCATGGCTCTTCTGTGTTCCTGTGGATGCTGCACCGAAGACCTGCAGTCCCAAACAATTTGTGTGTAAAGACCAGATCACCTGCATCTCCAAGGGCTGGCGGTGCGATGGGGAGAAGGACTGTCCCGACGGCTCTGATGAGTCCCCCGATGTCTGTGAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64337 lncRNA downstream 650480 11226487 ~ 11258218 (-) True G51403
TU64280 lncRNA downstream 744324 11163346 ~ 11164374 (-) True G51354
TU64261 lncRNA downstream 768425 11057690 ~ 11140273 (-) False G51344
TU64527 lncRNA upstream 80987 12002925 ~ 12010394 (-) True G51574
TU64548 lncRNA upstream 159274 12081212 ~ 12093785 (-) True G51588
TU64607 lncRNA upstream 421202 12343140 ~ 12343342 (-) True G51634
TU64648 lncRNA upstream 516813 12438751 ~ 12439523 (-) True G51674
TU64668 lncRNA upstream 532981 12454919 ~ 12476199 (-) True G51693
AMCG00008789 mRNA downstream 13235 11882010 ~ 11895463 (-) True AMCG00008789
AMCG00008788 mRNA downstream 30512 11800161 ~ 11878186 (-) True AMCG00008788
AMCG00008786 mRNA downstream 154285 11747072 ~ 11754413 (-) True AMCG00008786
AMCG00008785 mRNA downstream 180528 11714662 ~ 11728170 (-) True AMCG00008785
AMCG00008781 mRNA downstream 357580 11548011 ~ 11551118 (-) True AMCG00008781
AMCG00008792 mRNA upstream 89619 12011557 ~ 12022986 (-) True AMCG00008792
AMCG00008793 mRNA upstream 102222 12024160 ~ 12033766 (-) True AMCG00008793
AMCG00008794 mRNA upstream 113228 12035166 ~ 12066116 (-) True AMCG00008794
AMCG00008797 mRNA upstream 185944 12107882 ~ 12146340 (-) True AMCG00008797
AMCG00008796 mRNA upstream 228223 12150161 ~ 12161522 (-) True AMCG00008796
TU64350 other downstream 582339 11320810 ~ 11326359 (-) False AMCG00008777
TU64340 other downstream 612948 11235642 ~ 11295750 (-) False AMCG00008777
TU64128 other downstream 1109544 10797632 ~ 10799154 (-) True G51250
TU64105 other downstream 1196213 10680278 ~ 10712485 (-) False G51241
TU64811 other upstream 968873 12890811 ~ 12891597 (-) True G51797
TU64813 other upstream 973397 12895335 ~ 12897134 (-) True G51799
TU64897 other upstream 1078888 13000826 ~ 13001888 (-) True G51867
TU64926 other upstream 1168599 13090537 ~ 13097934 (-) True AMCG00008845
TU65001 other upstream 1335768 13257706 ~ 13261822 (-) True AMCG00008853

Expression Profile