RNA id: AMCG00008798


Basic Information

Item Value
RNA id AMCG00008798
length 264
RNA type mRNA
GC content 0.52
exon number 3
gene id AMCG00008798
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12113384 ~ 12126602 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgaagGCCTTCATGAGGGAGTGCATTTCCATCCACATTGGCCAGGCAGGGGTGCAGATGGGCAATGCATGTTGGGAACTGTACTGTCTGGAACATGGATTCAAGCCTGATGGAACCCTGGATGGTGTGGAGCTTGTGGACCAAGTGGACTCCTCTTTTGGCACTTTCTTTAGTGAGACGGGAGCTGGGAAACATGTGCCCAGAGCGGTGTTCATAGACCTGGAGCCAACTGTTATAGGGTATGGGGAAGCTTTGATCAGGTGA

Function

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64544 lncRNA upstream 33180 12078697 ~ 12080204 (+) True G51586
TU64539 lncRNA upstream 35871 12075488 ~ 12077513 (+) True G51584
TU64537 lncRNA upstream 51095 12062074 ~ 12062289 (+) True G51582
TU64429 lncRNA upstream 396902 11712712 ~ 11716482 (+) False G51483
TU64430 lncRNA upstream 396902 11712712 ~ 11716482 (+) True G51483
TU64579 lncRNA downstream 64131 12190733 ~ 12249909 (+) True G51614
TU64639 lncRNA downstream 299331 12425933 ~ 12426222 (+) True G51665
TU64647 lncRNA downstream 312249 12438851 ~ 12439523 (+) True G51673
TU64660 lncRNA downstream 377314 12503916 ~ 12504176 (+) True G51685
TU64650 lncRNA downstream 421458 12548060 ~ 12549618 (+) True AMCG00008810
AMCG00008791 mRNA upstream 110578 11982778 ~ 12002806 (+) True AMCG00008791
AMCG00008787 mRNA upstream 279040 11833286 ~ 11834344 (+) True AMCG00008787
AMCG00008784 mRNA upstream 408976 11694841 ~ 11704408 (+) False AMCG00008784
AMCG00008782 mRNA upstream 494529 11602415 ~ 11618855 (+) True AMCG00008782
AMCG00008783 mRNA upstream 513747 11567858 ~ 11599637 (+) True AMCG00008783
AMCG00008795 mRNA downstream 5884 12132486 ~ 12143358 (+) True AMCG00008795
AMCG00008800 mRNA downstream 102925 12229527 ~ 12235458 (+) True AMCG00008800
AMCG00008799 mRNA downstream 110029 12236631 ~ 12237359 (+) True AMCG00008799
AMCG00008804 mRNA downstream 211284 12337886 ~ 12338736 (+) True AMCG00008804
AMCG00008803 mRNA downstream 232125 12358727 ~ 12359365 (+) True AMCG00008803
TU64384 other upstream 647896 11460363 ~ 11465488 (+) True G51445
TU64201 other upstream 1072710 10984890 ~ 11040674 (+) False G51297
TU64057 other upstream 1406291 10705478 ~ 10707093 (+) False AMCG00008749
TU63913 other upstream 2182303 9929478 ~ 9931081 (+) False AMCG00008727
TU64730 other downstream 588892 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 716113 12842715 ~ 12846233 (+) True G51756
TU64826 other downstream 798636 12925238 ~ 12926794 (+) True G51812
TU64845 other downstream 854202 12980804 ~ 12992492 (+) True AMCG00008837
TU64968 other downstream 1095718 13222320 ~ 13224946 (+) True G51928

Expression Profile