RNA id: AMCG00008800


Basic Information

Item Value
RNA id AMCG00008800
length 399
RNA type mRNA
GC content 0.58
exon number 4
gene id AMCG00008800
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12229527 ~ 12235458 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atggagatagagagggagggaaccACCCCGGGCGGTGCCGGGAGAGAGCTACTGGggtctggactggactgggagCACATTGTGCCTCTGCTATTACTGGATATCCTGAGAGGAAggaaagagggggaggaggaggaggatagagagagagagacagggAACTCCAGTGCGGACCACCGGGTGCAGCTGGACCTGGGGCTGTGGGACAAGTTCAGCGAGTTGTCCACCAAGTGCATCATCAAGATCGTGGAGTTCGCCAAGAGGCTGCCTGGCTTCACCACCCTGACCATCGCCGACCAAATCACCCTGCTGAAGGCTGCCTGTCTGGACATCCTGGCTCAGGGCATCAACACTGCTTTAAAATTCACACTGCCTCCCCCTCCAGTAAAGGACGAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64544 lncRNA upstream 149323 12078697 ~ 12080204 (+) True G51586
TU64539 lncRNA upstream 152014 12075488 ~ 12077513 (+) True G51584
TU64537 lncRNA upstream 167238 12062074 ~ 12062289 (+) True G51582
TU64429 lncRNA upstream 513045 11712712 ~ 11716482 (+) False G51483
TU64639 lncRNA downstream 190475 12425933 ~ 12426222 (+) True G51665
TU64647 lncRNA downstream 203393 12438851 ~ 12439523 (+) True G51673
TU64660 lncRNA downstream 268458 12503916 ~ 12504176 (+) True G51685
TU64650 lncRNA downstream 312602 12548060 ~ 12549618 (+) True AMCG00008810
TU64687 lncRNA downstream 324013 12559471 ~ 12559699 (+) True G51710
AMCG00008795 mRNA upstream 86169 12132486 ~ 12143358 (+) True AMCG00008795
AMCG00008798 mRNA upstream 102925 12113384 ~ 12126602 (+) True AMCG00008798
AMCG00008791 mRNA upstream 226721 11982778 ~ 12002806 (+) True AMCG00008791
AMCG00008787 mRNA upstream 395183 11833286 ~ 11834344 (+) True AMCG00008787
AMCG00008784 mRNA upstream 525119 11694841 ~ 11704408 (+) False AMCG00008784
AMCG00008799 mRNA downstream 1173 12236631 ~ 12237359 (+) True AMCG00008799
AMCG00008804 mRNA downstream 102428 12337886 ~ 12338736 (+) True AMCG00008804
AMCG00008803 mRNA downstream 123269 12358727 ~ 12359365 (+) True AMCG00008803
AMCG00008808 mRNA downstream 150122 12385580 ~ 12386302 (+) True AMCG00008808
AMCG00008809 mRNA downstream 163954 12399412 ~ 12415105 (+) True AMCG00008809
TU64384 other upstream 764039 11460363 ~ 11465488 (+) True G51445
TU64201 other upstream 1188853 10984890 ~ 11040674 (+) False G51297
TU64057 other upstream 1522434 10705478 ~ 10707093 (+) False AMCG00008749
TU63913 other upstream 2298446 9929478 ~ 9931081 (+) False AMCG00008727
TU64730 other downstream 480036 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 607257 12842715 ~ 12846233 (+) True G51756
TU64826 other downstream 689780 12925238 ~ 12926794 (+) True G51812
TU64845 other downstream 745346 12980804 ~ 12992492 (+) True AMCG00008837
TU64968 other downstream 986862 13222320 ~ 13224946 (+) True G51928

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU305550 True 18755 TUCP 0.41 2 NC_047610.1 20252170 ~ 20271907 (-)