RNA id: AMCG00008801


Basic Information

Item Value
RNA id AMCG00008801
length 1744
RNA type mRNA
GC content 0.48
exon number 3
gene id AMCG00008801
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12237425 ~ 12240059 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttttttttttttttttacaaacattatCCCTTCAGTGTTACAGCACCAAGGGCCCATAAACAAAAGCAGATGATTTTAGGATTCACCCATTGGCTGCACACCTGGTCCAGCTGGCAGCTCTGCCAAGTCACACGGTTCCCAATGAAAACACACCTCATGTTCGGcagggtgcgtgtgtgtgcgcatgtgtgtgagATGAGACTCAGACAGCTGTCTGTGACTAATCTATTCCAAATCAGGATTATTATCATTTCGAACAACCATGCGGTCAAATACTGAACCCCCCtccagaaaacaaatcacatgatTAAGAACTTGCATTTCTGCTCCACTCTGTCAGTTTATAAGATGACTTTGCTGTGGTGTCTTTGTGTCATGGATGTAAGGATGTATTTATGACCACAGACAGTGTCTTCGTCCCTGAGGTGAGCTTTTCTTCAGTCCTGAGATCCTGTTTAGTGTATTGGTGGATTCAGTTTGGCAATATTTCTCCTGTAACTTGTGCATGGTGGAAACTAGACAACCACAGTCAttctcaaaaaaacaaacaaaccaacctcCTCAGTTCAAGAGTTGtagatgttttgtttggtttcgtTCCATTTGGTTTTCAGTCTCCGGATCGTTTCAGAGCAGGCGGTGTGGCGGAGAGCTGTGCAGACTGGGCCCAAGGTGCCGGAGAGCTTTGATTTGCTGGTGCTAGGAGAAGGACAGCTGAGAGTATTGCCTCTTCTAGTGTCCAACCAGGCAGCTAGGGTTTGGTCCACAAAAGTGTAGCCCTGAGTGTGTCTTAATACAACAACAACGAAAAAAGGAGAGTCCTTGAATGCCTACCCTAGCTGTGGTGGGAGTTGCATTGGTTTTTCAATTTGGTTGAGGGCGTTTCATTGCATCCTAGCCAGCCAGCTTTTGATTCATATCgtttttgtcctttttctgttttgtgttcgTAGTTGAATCTTATAGGGGCCTGGCttgaaactgaaagcaaaacaaatagcAATGGCATCTCATGTACACCACCTGAGGCCAAAGGcaaaattcatatattttttaaatgaaaaagtctCTCAAAATGTTTATGATTCCGCAGCTGGTAAAGACCCGAGAATGCACTGCTTCGGCACTGCTGCCCAGTCACCCCAGTCATGTGACCACAGACCCGTGGTCCTGTGCAGCTGGGAGCTATAGGGGTGTTGGGAACTGATCTGATGTTTGTAGCTGTAGGATAACATAAAGATCAGTCCCCCCACCGCCCAGTGCCACAGATTCCAAAGTGATGCGCACTCTCTGAACTCTCAGAGGGCGCTGGGATCTGAGGGCGGGCACGCTTGTTGAcacttattttagtttttttttttttgcattcatgtCTGCATGGCGATGTCCGTCCGTGAAGGATCCCAAAGTGCTGAATCTGCGTGAGTGCCAGTGCTGGGAGATGAACGGGGAGCATGGTGCCAACGGTCTGGGCATTGGTCCGGCGAAGTCTGTGAAGTctgaggAGGCATCTTTAGCACCGCCTGGTGGCTCGACACAGTACTGCGCCCCTGGAGGAGGCGGGCAGCAGAGTGGGAGCGTGTGCTTGTCCAGGTTACACAACTCCAGGCAGCGTCTGTTTGGCCAGGGCAGTTGTGCGCCCCCTCTGAGAGATTTCCCCCTCCTGCCACCAGAGGGGGTATGTGGGGAGTGGGATATAGGGGCGCTGTGTATGAAATGCCACTGTCTGTGGGTTCTCTGA

Function

GO:

id name namespace
GO:0005911 cell-cell junction cellular_component
GO:0005921 gap junction cellular_component
GO:0005922 connexin complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64548 lncRNA downstream 143640 12081212 ~ 12093785 (-) True G51588
TU64527 lncRNA downstream 227031 12002925 ~ 12010394 (-) True G51574
TU64337 lncRNA downstream 979207 11226487 ~ 11258218 (-) True G51403
TU64280 lncRNA downstream 1073051 11163346 ~ 11164374 (-) True G51354
TU64266 lncRNA downstream 1177499 11057690 ~ 11059926 (-) False G51344
TU64607 lncRNA upstream 103081 12343140 ~ 12343342 (-) True G51634
TU64648 lncRNA upstream 198692 12438751 ~ 12439523 (-) True G51674
TU64668 lncRNA upstream 214860 12454919 ~ 12476199 (-) True G51693
TU64677 lncRNA upstream 263403 12503462 ~ 12503679 (-) True G51700
TU64683 lncRNA upstream 299548 12539607 ~ 12540344 (-) True G51706
AMCG00008796 mRNA downstream 75903 12150161 ~ 12161522 (-) True AMCG00008796
AMCG00008797 mRNA downstream 91085 12107882 ~ 12146340 (-) True AMCG00008797
AMCG00008794 mRNA downstream 171309 12035166 ~ 12066116 (-) True AMCG00008794
AMCG00008793 mRNA downstream 203659 12024160 ~ 12033766 (-) True AMCG00008793
AMCG00008792 mRNA downstream 214439 12011557 ~ 12022986 (-) True AMCG00008792
AMCG00008802 mRNA upstream 8241 12248300 ~ 12259331 (-) True AMCG00008802
AMCG00008815 mRNA upstream 361232 12601291 ~ 12605260 (-) True AMCG00008815
AMCG00008817 mRNA upstream 401928 12641987 ~ 12651818 (-) True AMCG00008817
AMCG00008818 mRNA upstream 413554 12653613 ~ 12653945 (-) True AMCG00008818
AMCG00008816 mRNA upstream 425776 12665835 ~ 12668432 (-) True AMCG00008816
TU64350 other downstream 911066 11320810 ~ 11326359 (-) False AMCG00008777
TU64340 other downstream 941675 11235642 ~ 11295750 (-) False AMCG00008777
TU64128 other downstream 1438271 10797632 ~ 10799154 (-) True G51250
TU64105 other downstream 1524940 10680278 ~ 10712485 (-) False G51241
TU64811 other upstream 650752 12890811 ~ 12891597 (-) True G51797
TU64813 other upstream 655276 12895335 ~ 12897134 (-) True G51799
TU64897 other upstream 760767 13000826 ~ 13001888 (-) True G51867
TU64926 other upstream 850478 13090537 ~ 13097934 (-) True AMCG00008845
TU65001 other upstream 1017647 13257706 ~ 13261822 (-) True AMCG00008853

Expression Profile