RNA id: AMCG00008806


Basic Information

Item Value
RNA id AMCG00008806
length 441
RNA type mRNA
GC content 0.58
exon number 1
gene id AMCG00008806
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12434623 ~ 12435063 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCTCCTATTTCGTGAACCCTCTTTTCTCCAAATACAAAGCCGGCGAGTCTCTGGAACCAACTTACTACGACTGCCGGTTCCCTCAGAGCGTCAGCCGGAGCCACGCGTTGGTTTACGGTCCCGGAGCGGCGCCCACCGGCTTCCAGCACCCGTCCCACCACGTCCAGGACTTCTTCCACCACGGCACCTCCGGCATCTCCAACCCCGGATACCAGCAAAGCCCCTGCGCCCTGGCTTGCCACGGGGACGCCACCAAATTCTACGGATACGAAGCCCTTCCGAGGCAGTCGCTGTATGGCGCACAGCAAGAGCCCAGCGTAGCGCAATATGCAGACTGTAAATCGACTAACGGCGCTAACCCAGGAGACGGACAAGCCCACTTAAATCAAACTTCGTCTTCTAGTCTCATGTTTCCCTGGATGAGACCACACGGTTAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09308 HOX_8; homeobox protein HoxB/C/D8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64639 lncRNA upstream 8401 12425933 ~ 12426222 (+) True G51665
TU64579 lncRNA upstream 184714 12190733 ~ 12249909 (+) True G51614
TU64544 lncRNA upstream 354419 12078697 ~ 12080204 (+) True G51586
TU64539 lncRNA upstream 357110 12075488 ~ 12077513 (+) True G51584
TU64537 lncRNA upstream 372334 12062074 ~ 12062289 (+) True G51582
TU64647 lncRNA downstream 3788 12438851 ~ 12439523 (+) True G51673
TU64660 lncRNA downstream 68853 12503916 ~ 12504176 (+) True G51685
TU64650 lncRNA downstream 112997 12548060 ~ 12549618 (+) True AMCG00008810
TU64687 lncRNA downstream 124408 12559471 ~ 12559699 (+) True G51710
TU64697 lncRNA downstream 211460 12646523 ~ 12647964 (+) True G51718
AMCG00008807 mRNA upstream 11217 12422714 ~ 12423406 (+) True AMCG00008807
AMCG00008809 mRNA upstream 19518 12399412 ~ 12415105 (+) True AMCG00008809
AMCG00008808 mRNA upstream 48321 12385580 ~ 12386302 (+) True AMCG00008808
AMCG00008803 mRNA upstream 75258 12358727 ~ 12359365 (+) True AMCG00008803
AMCG00008804 mRNA upstream 95887 12337886 ~ 12338736 (+) True AMCG00008804
AMCG00008805 mRNA downstream 27975 12463038 ~ 12465622 (+) True AMCG00008805
AMCG00008812 mRNA downstream 33753 12468816 ~ 12469543 (+) True AMCG00008812
AMCG00008811 mRNA downstream 69193 12504256 ~ 12505029 (+) True AMCG00008811
AMCG00008810 mRNA downstream 104535 12539598 ~ 12548554 (+) False AMCG00008810
AMCG00008819 mRNA downstream 133965 12569028 ~ 12569687 (+) True AMCG00008819
TU64384 other upstream 969135 11460363 ~ 11465488 (+) True G51445
TU64201 other upstream 1393949 10984890 ~ 11040674 (+) False G51297
TU64057 other upstream 1727530 10705478 ~ 10707093 (+) False AMCG00008749
TU63913 other upstream 2503542 9929478 ~ 9931081 (+) False AMCG00008727
TU64730 other downstream 280431 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 407652 12842715 ~ 12846233 (+) True G51756
TU64826 other downstream 490175 12925238 ~ 12926794 (+) True G51812
TU64845 other downstream 545741 12980804 ~ 12992492 (+) True AMCG00008837
TU64968 other downstream 787257 13222320 ~ 13224946 (+) True G51928

Expression Profile