RNA id: AMCG00008809



Basic Information


Item Value
RNA id AMCG00008809
length 906
RNA type mRNA
GC content 0.62
exon number 2
gene id AMCG00008809
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12399412 ~ 12415105 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTCATGTCCCAACAACGTGGCGGCGGGTTCCTTTCTCATGGATTCTCTCATGGGCTCCAACGCGTACCGAGGTGAGGGCTACACGGCCAGCCCGGGGATTTACATGCAAACGGGCGCTGAGTATGGCTGTGCAGTGATGAGAAACTGTGGGATTGTACCATCCCCTCTCTCCAAAAGAGACGAGATCAGCCCGGCCAACCTGCCGCTCAGCGCCTACCACCACCCGTCTTACCTGCCGCAGCTGGACACCTGGGGGGCAGACCCTAAAAGTTCCTGCAGGATCGAGCAACCTGTTGCCAGACCTTTGCCCTCCTGCTCCTTCCCAGCCGCCAATGTCAAAGAGGAGGCGATGTGCTGCATGTACAGAGCAGACATCAGCGGGGCGAAGGAGGCTGCCGAACCGACCACCTACACCCGACTTGGGGCGGGGAGCAGCCAGCCCGAGCGCGCCGTGCCAGTGCCGGGCTACTTCCGAGTCGCCCAGGGTTACCCGGGGGAGAAGGCGCAAGACGCGGACGAGTTCGGCCCCGGTTTCGCCTCGGTGGTGAGCAGTTTGACCCCTCCAGTTGACACCAGCGGGACGCCTCCACTGCCCACCGCCGAATCCAAGCCAGAACAGCAGACAGACACCGCCGAGATCAAGGACGAGGACCCCACCGCGGCGAAGAGATTATCCGAGCTGGACAGGGAGAGCTACCCCAAGACAGACAGCAGTACAGACGCCTCGGACACCGAAGTCAAAGCTCACCCTGACCCAGCCTCAACGCCCGGGTACCCAAGTGGGTTTGACCGTGGAGCCGTGACCTCCAGAGCGGATCAGATCAGACGGGAAAGGCGACAGGGAGTtaaagagggggagagggaggggaaggagaaagaggGGTTACCGTGCGAAACCTTATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU64579 lncRNA upstream 149503 12190733 ~ 12249909 (+) True G51614
TU64544 lncRNA upstream 319208 12078697 ~ 12080204 (+) True G51586
TU64539 lncRNA upstream 321899 12075488 ~ 12077513 (+) True G51584
TU64537 lncRNA upstream 337123 12062074 ~ 12062289 (+) True G51582
TU64430 lncRNA upstream 682930 11712712 ~ 11716482 (+) True G51483
TU64639 lncRNA downstream 10828 12425933 ~ 12426222 (+) True G51665
TU64647 lncRNA downstream 23746 12438851 ~ 12439523 (+) True G51673
TU64660 lncRNA downstream 88811 12503916 ~ 12504176 (+) True G51685
TU64650 lncRNA downstream 132955 12548060 ~ 12549618 (+) True AMCG00008810
TU64687 lncRNA downstream 144366 12559471 ~ 12559699 (+) True G51710
AMCG00008808 mRNA upstream 13110 12385580 ~ 12386302 (+) True AMCG00008808
AMCG00008803 mRNA upstream 40047 12358727 ~ 12359365 (+) True AMCG00008803
AMCG00008804 mRNA upstream 60676 12337886 ~ 12338736 (+) True AMCG00008804
AMCG00008799 mRNA upstream 162053 12236631 ~ 12237359 (+) True AMCG00008799
AMCG00008800 mRNA upstream 163954 12229527 ~ 12235458 (+) True AMCG00008800
AMCG00008807 mRNA downstream 7609 12422714 ~ 12423406 (+) True AMCG00008807
AMCG00008806 mRNA downstream 19518 12434623 ~ 12435063 (+) True AMCG00008806
AMCG00008805 mRNA downstream 47933 12463038 ~ 12465622 (+) True AMCG00008805
AMCG00008812 mRNA downstream 53711 12468816 ~ 12469543 (+) True AMCG00008812
AMCG00008811 mRNA downstream 89151 12504256 ~ 12505029 (+) True AMCG00008811
TU64384 other upstream 933924 11460363 ~ 11465488 (+) True G51445
TU64201 other upstream 1358738 10984890 ~ 11040674 (+) False G51297
TU64057 other upstream 1692319 10705478 ~ 10707093 (+) False AMCG00008749
TU63913 other upstream 2468331 9929478 ~ 9931081 (+) False AMCG00008727
TU64730 other downstream 300389 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 427610 12842715 ~ 12846233 (+) True G51756
TU64826 other downstream 510133 12925238 ~ 12926794 (+) True G51812
TU64845 other downstream 565699 12980804 ~ 12992492 (+) True AMCG00008837
TU64968 other downstream 807215 13222320 ~ 13224946 (+) True G51928

Expression Profile