RNA id: AMCG00008810


Basic Information

Item Value
RNA id AMCG00008810
length 1399
RNA type mRNA
GC content 0.59
exon number 3
gene id AMCG00008810
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12539598 ~ 12549618 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAGAGAGGCCGGGTAGTCGGTGAGCGCGGAGAAGCGGAGTGAGTGTCCTGGACGCGTCTCCTCCATTGACTTGCTACTCGGGACGCCTGCGACTGTGGGCACTGTTCGCCCAGCCCGGCCATTGGAGCAGAGAGACACGTGATCCCTTGGGTTCACTTTTCTTGGTGTACCAAAGGTGTCTGAGGGTCTCCCAACAGCGAGGCgcaagaaaatacacaaaaaaccCATCAATTATACAAAACTGCTCAATATAGAGATATAGCCACAGAGAGCGAAGAGAGGAAACAAGAGGCAAGGGAATTCCATTAGCAGGTctcattattaaaatgcaaaagacgCTTTATTACGAAAATGCAGGCCCCTTTTTGGGTTACCCTTGCCAAGAACCCGCCGGATTGGGATTCGAGCAGCTGTACCCAACGTCCTCAGAATACCAGTCTCTCACCTGCTACCTGCAAGACGACACCTCCCCGTGTGACCCGAGCAGCGACCCCGAGCACAATGTGGGCTCCAGCGGCTGCCACATCCCCGAGCTGCCGGAGCCCCCACTCCGACACCCCCCTCTCACCCCCTCCCCAGGCGCCAGCTCCACTTCGACCCACAGCAGTCCCTGTAAAAGCGCCTCGGACCCGCTCGACTGCAGCCCCGGAGCAGAGAAAGCAACCGCTAACGGCAGGACTAGCACGGGCTCTGCCTTCAAGAGCAACTCACCAAAACAAATCTTTCCGTGGATGAAGGAGTCGCGCCAGAGCTCCAAACAGAAGCACAACAATTTCATCACACCTGGAGCACCATACTCGGGGGAGCTGGGCTACGAGACCCCCCTCTCCCATCCCTACGCCAAAACCCCCGGCCCCATGGTCTACGGATTGGCTGCTTATTCCGCCTCGCCCTATGACTGCCCCCCCCCGCTACAGCTGCCGCCTCAGAAGAGGTACGGCGACCCCGCCCCCCTGCCACAGGATTACGACCAGGTTGACAACAGCTACCCCAGCCCTGGATACGTGGGGGCCAGCTTTGGAGAACCCCCCCCTTCCCACCCAATCCCACTCTTCAACCTCCAGCACCTCTCCTCAtcctctgcctcctcttcctcctctacctcctcctcctcctcctcctcctctgccagcATGGACTACAGCTGCGTGGCCCCCAGCCCCCCCAAGCACTCGCTGGGCCCCTGTGACCCCCACCTGCCCTACAGCAACCTGGGCTCGCACTGCACGCCTCAGGGCTCCGCTCAGGTGAAGCCACAGCCACCTCAGACCTCTGTCTCTGTTGCAGGATGTCAGAGTCTGCACAGACTTAGGACTCAAAGCACAGGCGGACCCAACACTGCCCACTTTGAAGACCCCTTCCCACAACTGCCTGACCTGGAAGCATCGGTCAGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64660 lncRNA upstream 35422 12503916 ~ 12504176 (+) True G51685
TU64647 lncRNA upstream 100075 12438851 ~ 12439523 (+) True G51673
TU64639 lncRNA upstream 113376 12425933 ~ 12426222 (+) True G51665
TU64579 lncRNA upstream 289689 12190733 ~ 12249909 (+) True G51614
TU64544 lncRNA upstream 459394 12078697 ~ 12080204 (+) True G51586
TU64687 lncRNA downstream 10917 12559471 ~ 12559699 (+) True G51710
TU64697 lncRNA downstream 97969 12646523 ~ 12647964 (+) True G51718
TU64731 lncRNA downstream 172528 12721082 ~ 12722980 (+) True G51735
TU64732 lncRNA downstream 190643 12739197 ~ 12745766 (+) True G51736
TU64810 lncRNA downstream 347795 12896349 ~ 12897107 (+) True G51796
AMCG00008811 mRNA upstream 34569 12504256 ~ 12505029 (+) True AMCG00008811
AMCG00008812 mRNA upstream 70055 12468816 ~ 12469543 (+) True AMCG00008812
AMCG00008805 mRNA upstream 73976 12463038 ~ 12465622 (+) True AMCG00008805
AMCG00008806 mRNA upstream 104535 12434623 ~ 12435063 (+) True AMCG00008806
AMCG00008807 mRNA upstream 116192 12422714 ~ 12423406 (+) True AMCG00008807
AMCG00008819 mRNA downstream 20474 12569028 ~ 12569687 (+) True AMCG00008819
AMCG00008814 mRNA downstream 106013 12654567 ~ 12659732 (+) True AMCG00008814
AMCG00008813 mRNA downstream 112225 12660779 ~ 12662451 (+) True AMCG00008813
AMCG00008820 mRNA downstream 139643 12688197 ~ 12693501 (+) True AMCG00008820
AMCG00008825 mRNA downstream 254715 12803269 ~ 12810428 (+) True AMCG00008825
TU64384 other upstream 1074110 11460363 ~ 11465488 (+) True G51445
TU64201 other upstream 1498924 10984890 ~ 11040674 (+) False G51297
TU64057 other upstream 1832505 10705478 ~ 10707093 (+) False AMCG00008749
TU63913 other upstream 2608517 9929478 ~ 9931081 (+) False AMCG00008727
TU64730 other downstream 166940 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 294161 12842715 ~ 12846233 (+) True G51756
TU64826 other downstream 376684 12925238 ~ 12926794 (+) True G51812
TU64845 other downstream 432250 12980804 ~ 12992492 (+) True AMCG00008837
TU64968 other downstream 673766 13222320 ~ 13224946 (+) True G51928

Expression Profile