RNA id: TU64650



Basic Information


Item Value
RNA id TU64650
length 1559
lncRNA type sense_over
GC content 0.46
exon number 1
gene id AMCG00008810
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12539598 ~ 12549618 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCACTCTTCAACCTCCAGCACCTCTCCTCAtcctctgcctcctcttcctcctctacctcctcctcctcctcctcctcctctgccagcATGGACTACAGCTGCGTGGCCCCCAGCCCCCCCAAGCACTCGCTGGGCCCCTGTGACCCCCACCTGCCCTACAGCAACCTGGGCTCGCACTGCACGCCTCAGGGCTCCGCTCAGGTACCCCCCACACTCACTCACCTGTGAGGGACGCACACCTGGCTGGCCCGGGTCTGGGCCTACATCTGGGTCACAGCCACACTGAACAAGCCTGCTCATCCATCTTCTCTCCGGgccctttattttgttttgattttgactcAGGTGAAGCCACAGCCACCTCAGACCTCTGTCTCTGTTGCAGGATGTCAGAGTCTGCACAGACTTAGGACTCAAAGCACAGGCGGACCCAACACTGCCCACTTTGAAGACCCCTTCCCACAACTGCCTGACCTGGAAGCATCGGTCAGCTGATCATGATTATCATACCCCAAAATCCAACCCACGTCCCTCAGCCCTGCCGCACCCAATCCTCAACTCCCTCAGCTTCAACTAGAGAAGGACACCAGGCAACTCCTATCAAATCCTCCTTCTCAAACAGGCAATGCGTTCCccctctctacacacacactaaccgGAAGGCTTGCCGATCGCCTGCCTGTTTTCTTGATGGAAggactccctccctccctctcacctcaTCCCGCACAGGGACGTCTGAGATTCCTGAAAGCAAGAACAAACAATtcatacaaatgaaaaactgaCAATCCTCAAACTAAGAGGAGAACCTAAAGGACATTACTGGTGTCAAAGACAAAAATCAAAGACTCTGGACCAAACAGACCCAGGAGCCCACAGCCTGAGAAATATTGCTGAAGCTCGGCAATGGCCTTGGATGTGACCTGTTTTATActtgaataataatgataacctTAAGAAGAAGAACCTGCATCCCTCCAGCTCCCATCTTCCTGGCCTCTGTCAGATCAGTATTATTGTGCTAGCTCTTGAAGACAGAAGGCATAATACCTCTCTATTTATGATCTGTATCGAAATGCATGTGGACTATTTATTGGACATCATTTATTGTGAGCTACCTAAGCCATAAACACGATCAGGGtaaaacaacatattaatttaaaaaacaatgttgaatTAGGAAAATGCAACAGGGTTTCttatgcatatttgtatttcctcCGCAGATATAGTTGATAATATTTCAAGTAATTTATGGAACCAATTACGGGTGATTTTATCAttcttagttttattatttcGTTTTGTTGCTTGTTTCAATTGCTCCCTCGTTTATTAAGCACTCAGAGTGCTTCGCCAACTCCTCTTTCCTTCTACAATGTCctttaaaaaactatttgtatttatgtaaaatatattatatgttcATACTGGATTTTTTAAAAGTCTCTTTTGTAACTTTTGGGGCGATTCAATTTCTTATGTAGGAAACGTTGATCAAATTAAGCTACTACTCTACAcgggtttttgttttattttatttctgtgcttcCTTN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU64660 lncRNA upstream 43884 12503916 ~ 12504176 (+) True G51685
TU64647 lncRNA upstream 108537 12438851 ~ 12439523 (+) True G51673
TU64639 lncRNA upstream 121838 12425933 ~ 12426222 (+) True G51665
TU64579 lncRNA upstream 298151 12190733 ~ 12249909 (+) True G51614
TU64544 lncRNA upstream 467856 12078697 ~ 12080204 (+) True G51586
TU64687 lncRNA downstream 9853 12559471 ~ 12559699 (+) True G51710
TU64697 lncRNA downstream 96905 12646523 ~ 12647964 (+) True G51718
TU64731 lncRNA downstream 171464 12721082 ~ 12722980 (+) True G51735
TU64732 lncRNA downstream 189579 12739197 ~ 12745766 (+) True G51736
TU64810 lncRNA downstream 346731 12896349 ~ 12897107 (+) True G51796
AMCG00008811 mRNA upstream 43031 12504256 ~ 12505029 (+) True AMCG00008811
AMCG00008812 mRNA upstream 78517 12468816 ~ 12469543 (+) True AMCG00008812
AMCG00008805 mRNA upstream 82438 12463038 ~ 12465622 (+) True AMCG00008805
AMCG00008806 mRNA upstream 112997 12434623 ~ 12435063 (+) True AMCG00008806
AMCG00008807 mRNA upstream 124654 12422714 ~ 12423406 (+) True AMCG00008807
AMCG00008819 mRNA downstream 19410 12569028 ~ 12569687 (+) True AMCG00008819
AMCG00008814 mRNA downstream 104949 12654567 ~ 12659732 (+) True AMCG00008814
AMCG00008813 mRNA downstream 111161 12660779 ~ 12662451 (+) True AMCG00008813
AMCG00008820 mRNA downstream 138579 12688197 ~ 12693501 (+) True AMCG00008820
AMCG00008825 mRNA downstream 253651 12803269 ~ 12810428 (+) True AMCG00008825
TU64384 other upstream 1082572 11460363 ~ 11465488 (+) True G51445
TU64201 other upstream 1507386 10984890 ~ 11040674 (+) False G51297
TU64057 other upstream 1840967 10705478 ~ 10707093 (+) False AMCG00008749
TU63913 other upstream 2616979 9929478 ~ 9931081 (+) False AMCG00008727
TU64730 other downstream 165876 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 293097 12842715 ~ 12846233 (+) True G51756
TU64826 other downstream 375620 12925238 ~ 12926794 (+) True G51812
TU64845 other downstream 431186 12980804 ~ 12992492 (+) True AMCG00008837
TU64968 other downstream 672702 13222320 ~ 13224946 (+) True G51928

Expression Profile