RNA id: AMCG00008813


Basic Information

Item Value
RNA id AMCG00008813
length 1365
RNA type mRNA
GC content 0.45
exon number 2
gene id AMCG00008813
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12660779 ~ 12662451 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cctccttcccccccccccccaaacacaccaCTAAGGTCTTGACTAGAGAAAGCCAGCAAGCCTCTGTCTTGGCTTGGGAACCTGATTTTTCTTCCAACGGACAAGGACTTAATTCAGGAAGGCTCATTCCGCCACTAGAAGGATTTAGTTCCTTTCTGAGCCACGACCAAGGCTAGCTTACATGCGTTACTTGAGCCTAGCCATGGGAGCCAGCTGAGGGAGAGAAGTAGCAAGAGATCATCGCAAGGAGCCAGAGAAGCAGGGGAAAGTCTTTTTTGAGTACAGAAGGTTGCTCTAATGAGACTAGCAGAGTCAGCAGCTACGAAAGGGGTATTTGTATACCATGCTAGTAGGTAAGAACAGACTTTTCaacttgtatttttgtttgatatttttccTATTTCTTCTCTAAATGTAAAACTAATCAATGAGTCTATCCTAGTAAGTTGCTCAGTCCAGGGTTTGTGTCAGCCAGCAAGGTTTAATTTTGCTCTTAAGTGGAGTAATCTCAAGGGTTCCACCTTCCTGATTTGTTAACTGCATACAGACATGGACCCTTTATTTTGAGCAAAAATTGAAAGACTAGGGCAGCTGAGATTCTTGCATTGCAGAATTCCTGGGGGAGTATTTGTGTCAAAAGCAGAATTTGGCAACCACCACTTTTCAGGGGTTGGtttgggggggaagggggcgTTATTTGTTTTGCCTGGTTGATGCAAACCCGGACTGTTAGgggatgtttttgtgtttgaggGTTCACTTTAAGGACCTGGATGCATGTTGAGCTTAATGTTTAAAAACCCTCATCTCCTCTTGTAAGCCTTGCAGGCCAATACATTATAGAACATGGCATAAATGTACCTTTTAGGTAGAGACCTTTCCAGTAACCGCATGGATTTGCAACGCTGGCCGTTGGTGTTGCTGTTCGTCCAAATTAAACCTCGTGTCGAGCTCTGCAGTAATGCATGCAGGAGGCGTTTCTGTGAGGACTAGTAGACGTACAAACTCAGTCCTTATTTGGCCTCGTCATTTTCCAGTTTGTACTTCAGACAACCTCCCGCCCTGCCCCTCTAGACAGAGTGGGATTTATAGAATAGCAGAGTAGTAGTGTCCAGTTGTAGCAGTCAAAGGGGCACTTCTCGCTTTATTTCCCCCCTACCAGTAACTGGTCATTCTGATTGATTTAGTTAAatttcattgtctttttaacaccctgggattttgtgtgtgtgtgtgcgcactaACCAGGCTTCTTCTCTGTTCTCAGGACTGTTGCATCATGCTAGGACCATTGGGCATGTCATTTTGCCTAAGAACGTCTCCCATGTTGAGAACTCTGAGATGACCTGCAGTGGCCAAACTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64697 lncRNA upstream 12815 12646523 ~ 12647964 (+) True G51718
TU64687 lncRNA upstream 101080 12559471 ~ 12559699 (+) True G51710
TU64650 lncRNA upstream 111161 12548060 ~ 12549618 (+) True AMCG00008810
TU64660 lncRNA upstream 156603 12503916 ~ 12504176 (+) True G51685
TU64647 lncRNA upstream 221256 12438851 ~ 12439523 (+) True G51673
TU64731 lncRNA downstream 58631 12721082 ~ 12722980 (+) True G51735
TU64732 lncRNA downstream 76746 12739197 ~ 12745766 (+) True G51736
TU64810 lncRNA downstream 233898 12896349 ~ 12897107 (+) True G51796
TU64828 lncRNA downstream 265167 12927618 ~ 12927845 (+) True G51814
TU64844 lncRNA downstream 316413 12978864 ~ 12980775 (+) True G51828
AMCG00008814 mRNA upstream 1047 12654567 ~ 12659732 (+) True AMCG00008814
AMCG00008819 mRNA upstream 91092 12569028 ~ 12569687 (+) True AMCG00008819
AMCG00008810 mRNA upstream 112225 12539598 ~ 12548554 (+) False AMCG00008810
AMCG00008811 mRNA upstream 155750 12504256 ~ 12505029 (+) True AMCG00008811
AMCG00008812 mRNA upstream 191236 12468816 ~ 12469543 (+) True AMCG00008812
AMCG00008820 mRNA downstream 25746 12688197 ~ 12693501 (+) True AMCG00008820
AMCG00008825 mRNA downstream 140818 12803269 ~ 12810428 (+) True AMCG00008825
AMCG00008824 mRNA downstream 158347 12820798 ~ 12840200 (+) True AMCG00008824
AMCG00008828 mRNA downstream 228551 12891002 ~ 12895612 (+) True AMCG00008828
AMCG00008830 mRNA downstream 237444 12899895 ~ 12907881 (+) True AMCG00008830
TU64384 other upstream 1195291 11460363 ~ 11465488 (+) True G51445
TU64201 other upstream 1620105 10984890 ~ 11040674 (+) False G51297
TU64057 other upstream 1953686 10705478 ~ 10707093 (+) False AMCG00008749
TU63913 other upstream 2729698 9929478 ~ 9931081 (+) False AMCG00008727
TU64730 other downstream 53043 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 180264 12842715 ~ 12846233 (+) True G51756
TU64826 other downstream 262787 12925238 ~ 12926794 (+) True G51812
TU64845 other downstream 318353 12980804 ~ 12992492 (+) True AMCG00008837
TU64968 other downstream 559869 13222320 ~ 13224946 (+) True G51928

Expression Profile