RNA id: AMCG00008819



Basic Information


Item Value
RNA id AMCG00008819
length 660
RNA type mRNA
GC content 0.62
exon number 1
gene id AMCG00008819
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12569028 ~ 12569687 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAACGCGTACCCAGAGATAGTGTGCGGAGCGGAGCCCGGCGCTCCCTACGCGGGGGGATACCCGGAGGCCCGGCTTCAGCATCTGGACCAGAGACCTTATTCGAAAGTGAGCTGTGGCGGAGAAGGACGTTACGTGGTGGGCACGGATTTCGCCTTGCATCGCCGGGTCTCACCTTTCCCCTGCAGCGGCGCCCTCAACCCCCCTCCggctcccactcccactccatCTGCCCCTCAGCATCCCGGGTTCTCCGGCACGAACACTTTCCACGCCGGCAGTCTTCACGTCACTTTCAGTCCCGGGACACCTGCTAGAGCCTCCTTCACCCACAGCCAGGGATACCCCTCCCAGCCGGCCTACCTCCACCATGCCCACCCGCACTCCTGCACAAACTCCCAGGACCTGGATTACACCGGGACTGGGTATCCCGTCAGCGCCGACCCTCCGGTGACCTTTTCCGTGCTCCACCCCCGGCTTGGGACGCTGGATCATCCCTACCAGTCGTGCGCTCAGGAAGGGTCGAGGTTACCTCTTCCTGAATGCCCATCGGAGGACGGAGACAACCCCCGGCTGGACACCGGCTACAGCAGCAAAACATTCGACTGGATGAAAGTGAAGCGAAACCCTCCCAGGATTGGTAAGGAAGTTTCTgattaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU64687 lncRNA upstream 9329 12559471 ~ 12559699 (+) True G51710
TU64650 lncRNA upstream 19410 12548060 ~ 12549618 (+) True AMCG00008810
TU64660 lncRNA upstream 64852 12503916 ~ 12504176 (+) True G51685
TU64647 lncRNA upstream 129505 12438851 ~ 12439523 (+) True G51673
TU64639 lncRNA upstream 142806 12425933 ~ 12426222 (+) True G51665
TU64697 lncRNA downstream 76836 12646523 ~ 12647964 (+) True G51718
TU64731 lncRNA downstream 151395 12721082 ~ 12722980 (+) True G51735
TU64732 lncRNA downstream 169510 12739197 ~ 12745766 (+) True G51736
TU64810 lncRNA downstream 326662 12896349 ~ 12897107 (+) True G51796
TU64828 lncRNA downstream 357931 12927618 ~ 12927845 (+) True G51814
AMCG00008810 mRNA upstream 20474 12539598 ~ 12548554 (+) False AMCG00008810
AMCG00008811 mRNA upstream 63999 12504256 ~ 12505029 (+) True AMCG00008811
AMCG00008812 mRNA upstream 99485 12468816 ~ 12469543 (+) True AMCG00008812
AMCG00008805 mRNA upstream 103406 12463038 ~ 12465622 (+) True AMCG00008805
AMCG00008806 mRNA upstream 133965 12434623 ~ 12435063 (+) True AMCG00008806
AMCG00008814 mRNA downstream 84880 12654567 ~ 12659732 (+) True AMCG00008814
AMCG00008813 mRNA downstream 91092 12660779 ~ 12662451 (+) True AMCG00008813
AMCG00008820 mRNA downstream 118510 12688197 ~ 12693501 (+) True AMCG00008820
AMCG00008825 mRNA downstream 233582 12803269 ~ 12810428 (+) True AMCG00008825
AMCG00008824 mRNA downstream 251111 12820798 ~ 12840200 (+) True AMCG00008824
TU64384 other upstream 1103540 11460363 ~ 11465488 (+) True G51445
TU64201 other upstream 1528354 10984890 ~ 11040674 (+) False G51297
TU64057 other upstream 1861935 10705478 ~ 10707093 (+) False AMCG00008749
TU63913 other upstream 2637947 9929478 ~ 9931081 (+) False AMCG00008727
TU64730 other downstream 145807 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 273028 12842715 ~ 12846233 (+) True G51756
TU64826 other downstream 355551 12925238 ~ 12926794 (+) True G51812
TU64845 other downstream 411117 12980804 ~ 12992492 (+) True AMCG00008837
TU64968 other downstream 652633 13222320 ~ 13224946 (+) True G51928

Expression Profile