RNA id: AMCG00008820


Basic Information

Item Value
RNA id AMCG00008820
length 2516
RNA type mRNA
GC content 0.47
exon number 7
gene id AMCG00008820
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12688197 ~ 12693501 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACTCAGGattgagtttgtgtgtgagtgtgagagtgcgGGGGCATCTGAAGCCTAAATGCTGTATTCTCTTTGCACAGGAACCTTCTCTGTACACGGTGAAGGCGGTTCTCATCCTGGACAACGATGGGGAGAGGCTGTACGCCAAGTATTACGATGACACGTACCCCACGGTGAAGGAGCAGAAGGCCTTTGAGAAGAACATCTTCAACAAGACCCACCGCACTGACAgtGAGATCGCTCTGCTAGAAGGATTGACGGTCGTCTACAAGAGCAACATTGACCTGTACTTCTATGTGATTGGCAGCTCACACGAAAATGAGCTGATGCTCATGTCGGTGCTGAACTGCCTGTTTGACTCGCTCAGTCAGATGCTGAGGGTGATCCTGGAGAGCGATCCCCAGCAGGTGGTGCACCGCGTGGCCCTGAGGggggaTGACGTGCCACTCACAGAGCAGACTGTCACTCAGgtgcTCCAGTCCGCTAAAGAGCAGATCAAGTGGTCTCTGCTGCGATAGGAGAGGAGCTGAAAGCAACGTGAGGGAggagtacaaacacacacacacacactcacacaaatacacacacacacacacacacacacagtgacagacgcacacagacgcTCCCATCTTGTGAATCTCTTTCCACCCGTCCCCGTCCCTCTGTCTCCGTGTCCAGCCCTCACCCCCAGGGCAGTGCTGACACATTCCACTTCCTCCACAGTCAGGCCAAACACCACAATTGTGTTTTTAGTCTCGTACTGTTCTGTAAAGGAATTCATTAGCTCATGGAGTCGGAGAGGGAAGTGGCTTTGGATGCTGTAGCTAGcgtctggggtgggggggggtgcaaGCAGAGATGTGGAGAGGAAAGAGATACGGGTCTCAATCTGACCAACAAAACTCATTGGACTGTAACTGCACTGAACTTGCCTGGTGCCTCCACCAATCAGCATCACCCAGGGACCTCAATGTACGTGACCTGAACCCCGCATTCCTGTTTGTCAAGGGTATGCAACAGTAGGCTGTTTTTATTGCGACTGTATGTGGAATTGAATGAAATGGTGTGAGAGCTGATTGGCCGATGGACGTTCCCTTCATTGTCTTACCTGACAGGCtaccctcccctcccctctcatgaataataattagaCTCGTAATATGGGGAATCTGAGAATGGAAGCTGGTTTCCAATTGGGCTTCCTGCCCCTCTGATGAATATTCACATTCCAGTAGCTGCTCGGTTGGGTTTGGTTGATATTTTCTGTACGTGCCGGTGTAACTGTTGCCACTTGATTTCCCACCGCCCTGCCCGCTCTTAATCACGATCCTTAGGAATCAGTAGCAGACCGACAGCGATGCATCACTGTGTATTGCTTCAGTAGGGTTTTCATCAGATACTGTAGTGACGTACAGAGACAGTGAGCGGTGGAGACGAcactgtgcatttgtttctgtaacaCACAAAGTCCCTGTGCCGGCTCTACATGCATTTATCAGATGGTTAAAAGACCGAAGCCCCCCAGGATGTCTCCTGTTCTCTGGACTGCTGTCTGTAACAGATGACTGCACTGAGTTGCGATGCACTGTACAATCTGTTGTGAAATGTTATCTTTCGTGCAGgttcaaaataaaccaaaataaataaacaaaaaaaatctttaaaatggcCAGTGCTTCTGCTCGCGTTTATTCTTTTAACACAACCGGTGTTTTAGGCTGGTCTTGTTGGCCATGTGCCGGTACTCCAACCCACCGTGCTGCTATGTTGGGTAACTGATCATTATGATTTAGTTATGTAGCAGGTGCTTTATCTCAGGTATTAAGCATTAACCCATGACGCTCTCCACATCCACAACATGTGAAGGGTTGCAGTTAGCTGTTATCTGCTTTTGTACCTATTACCAGCCTGTCTGTTTGGCCCCCCGAACTGCGGGGACTAAAGACCACCTCAACTCCGCAAAGCTTAGGCAATGGCTCCACCTGGTGGTCGAGAGGGGAAAACGCACGTAAAAGATAATTCTGTGTTTAGTTGACAGATGGAGGGGGCTCAGTCACGATTCATCAATCAATGAAATTGATCACTGATAGGTTGTAAACGTTCTGCTGAAGTTAGAACGACTTTACAGGTGCTCATAAGTCTTACTTCAGATACGTATATTTATAAAGAAGATCCCAGAAACGATAGGGGAATTATATTAGAATATTTGCTGAAGTGACTTGTAGAAGACACGCTGTAGATCGTAACAGGTGCAGAATCtaaggggtggggtggggggttcacCCAGCTGTGGATTGCTAAGAACTGGTGATGTACGTACAGCCCCGGAAAAAATTTACAGACCACTGcaattatttcttaaatcagcatctctacatgtatggcagccattccattccattcatagttttatttgaaaattgggagaaatgttttcagtagtttatagaataagacaaaaatgttaattttacccaaacacatacctataaatagtaaaaccagagaaactgat

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030117 membrane coat cellular_component

KEGG:

id description
K20472 COPZ, RET3; coatomer subunit zeta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64697 lncRNA upstream 40233 12646523 ~ 12647964 (+) True G51718
TU64687 lncRNA upstream 128498 12559471 ~ 12559699 (+) True G51710
TU64650 lncRNA upstream 138579 12548060 ~ 12549618 (+) True AMCG00008810
TU64660 lncRNA upstream 184021 12503916 ~ 12504176 (+) True G51685
TU64647 lncRNA upstream 248674 12438851 ~ 12439523 (+) True G51673
TU64731 lncRNA downstream 27581 12721082 ~ 12722980 (+) True G51735
TU64732 lncRNA downstream 45696 12739197 ~ 12745766 (+) True G51736
TU64810 lncRNA downstream 202848 12896349 ~ 12897107 (+) True G51796
TU64828 lncRNA downstream 234117 12927618 ~ 12927845 (+) True G51814
TU64844 lncRNA downstream 285363 12978864 ~ 12980775 (+) True G51828
AMCG00008813 mRNA upstream 25746 12660779 ~ 12662451 (+) True AMCG00008813
AMCG00008814 mRNA upstream 28465 12654567 ~ 12659732 (+) True AMCG00008814
AMCG00008819 mRNA upstream 118510 12569028 ~ 12569687 (+) True AMCG00008819
AMCG00008810 mRNA upstream 139643 12539598 ~ 12548554 (+) False AMCG00008810
AMCG00008811 mRNA upstream 183168 12504256 ~ 12505029 (+) True AMCG00008811
AMCG00008825 mRNA downstream 109768 12803269 ~ 12810428 (+) True AMCG00008825
AMCG00008824 mRNA downstream 127297 12820798 ~ 12840200 (+) True AMCG00008824
AMCG00008828 mRNA downstream 197501 12891002 ~ 12895612 (+) True AMCG00008828
AMCG00008830 mRNA downstream 206394 12899895 ~ 12907881 (+) True AMCG00008830
AMCG00008829 mRNA downstream 216184 12909685 ~ 12912736 (+) True AMCG00008829
TU64384 other upstream 1222709 11460363 ~ 11465488 (+) True G51445
TU64201 other upstream 1647523 10984890 ~ 11040674 (+) False G51297
TU64057 other upstream 1981104 10705478 ~ 10707093 (+) False AMCG00008749
TU63913 other upstream 2757116 9929478 ~ 9931081 (+) False AMCG00008727
TU64730 other downstream 21993 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 149214 12842715 ~ 12846233 (+) True G51756
TU64826 other downstream 231737 12925238 ~ 12926794 (+) True G51812
TU64845 other downstream 287303 12980804 ~ 12992492 (+) True AMCG00008837
TU64968 other downstream 528819 13222320 ~ 13224946 (+) True G51928

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_02141590_02142836.mRNA True 579 mRNA 0.41 6 CI01000001 2141560 ~ 2142986 (-)