RNA id: AMCG00008821


Basic Information

Item Value
RNA id AMCG00008821
length 2544
RNA type mRNA
GC content 0.46
exon number 4
gene id AMCG00008821
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12739173 ~ 12745962 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGAACACCGATCTCCAACTGTCCTATCAGTTTACTAAAAGACTTGAATATATCATGCTCTTATAGGCCAAGGACTGCTTTTATTCTTGGACTATTCATTTTtctctatttgttttgtgttgatcaAGTGTTGCTGTACTctgcataattataattttgctCTTATTGTGCCTTGGTCCCtgtatatgtgcatgtttacaaaaatgtttggcTCGCTTGGTGTCTTCATCCATGGACGCTCTGAAACCTAAGTGCTTCGATGCCCACCGGGCTCAACTGCTGAAACAACGACAAAATAACACGTAATGAACACTGGAAATCGTCGTTGTTGTACCTTAACACAGCATATTTCTTATGTTATGTTGTTAAATAAGTTCTAATGTGGTTAGTGTAGTTTTGTGGTTAGTGTACGTTTTTCATATGTTCATGTTCTTCCTTTCAGCTCTTATCTAGCCAGCCAGAGTGCAGAAGAATCAACACCCAGTGACCCAGAGTGCTGCAAAATaaatgtgGTCACCTAATTGTATGCGGCGCCTGAAAATACTCAAACTTTCACATACGTCCCGTCGAGAAAACTCTGGACACCCCTGCACTAGATGGACTAGATAAAAGAGCAATCACACAACGTAAATAGGCTTCTGGTAATGTGGGCAGTATCGAGTTTTCGATCTAAGAGCTTTAGGTATTGaaactgatattattattattactggctgtagtattgttgttgtttcagtcAATAGggctgcagtacagtacagtaatccATCAACGCGTCTCCAACGAAGACGCCTGCGCAGATGCAATCGCCTCAGTCCAGCCTGCTCCCTCCTCCCACTCCCGAAATCCGCCTCGGATTGCACCAGATGCGGACACCATCTACAGCCATGGATTCCACTGTTACGTTGCGGAGGTGCAAGCCAAAGATCATCGAGGCTCTTGGCTCTGACCCAGACTTCATCCTGCAGCACGCTGACTCACTAGACCTACTGTCCTGCCAGGAATACCGCCGGATCAAAGCGGCAGGAAACCCTTCAGAGAAAGCCCGGGACCTCCTGGACTGTGTCCTGGATAAAGGGTGCCGCGCCACCACCACCCttctggagctgctgcagaagcCAGAGATACAGGAGACCTACCCCCAGCTGGGGTTCCTCAGGGAGGGGGCAGTGCAGGAGGCACAGCGGGCAGGGTCGGCGCTGGTGACAGAGAAGCAGCTCATGCGTCTGGCGGGGGCCCTGGGCCACGAGTGGAAGCAGGTGGGGCGGCAGCTGCTGGGGCTGGGCAGCGTGCGGCTGGAGCAGTGCGAGGAGGAGAACCCGCACTGCCCGCGTGAGGCAGTGTTTGCCATGCTGCGCACCTGGAGGACCCGCGAGCGCTGGGGGGCCACGGCGGGGCGACTGCACGCCCTGCTATCCCAGGACGACTCCCCCCTGCACCCCGAGACTTATGACTTCCTGCTGGACCCCCCCTGACCCAAGCCACGCCTCCCTGCCTGCATTGCTGGAGTCTACAATTCCACCCACATACACACGCAAAACAAACTCAGACCCCTAACCCGAAGTGCAACCACAATCCTCACCCTAACTGTATCGCCTAATCCTGACTTTACTTCTTACACTAACAGTAACTCAAGGCCTGAGGGCAGTCCTCCAGCGCATCTCCCTGACCCTGAATTCAGACCATCATTCGACAATCATTAACACACAAGAAGTCAGTGCACAAGGactccattttttgtttttgtttattaaatagtTAAAAACCTGTTCACTGACGCAAGAAGTTGAGTCTATACAGGTTTTCTTATGCGTTTAGTGAATGCAGTCATGCAGCTTTTATTTTGGGAGTGCGAGGAGAAAACAAATCGAACGTGAAGAAGCACTACAGTTTCAGTGCAGGAATTAGGTGAATGATTTGTTTGTCCTACAAACCCCAACTTCATCCATAAACCTGTCCCTGACCTGACTAAAAGTCATAACCTTAACACTCCCACTTGAGCTTTCCTTGACTCAATTTTTTCAATGGACTCCAGACTAACTTTAAACCAAACCTCACCCCCAAGGCTTGACTGGGAAAGTGACTGAACGGGTTGAGTCAATCTCCAATGCAGCTGCAGTTTGAACTTGAAGTATAAAATTGTGTCTTATAAAGAGGTCTGTGACGTCACCATGGAGAAtaagtacttttttttatttctttattattgacTGACCTTGAAATCTCAAAGTTCACAGCCCTACTGCAAAACATGGAATTTATTGTAATCCCTCTTCAAGGAACTATGCTGTGATCCTGTGTTCACTTTCAATAATGTTTTCTCTTATATAGGGTTTTAATTTGGGTAGCTAATTTGGgtttccatttttgttgttcGGCTcaatacgtgtgtgtgtgtcatctgGTATTCCTTCTGACCATTGTACAAATCTTAAACAGTAACATTGATATCAAAAGATCtacgtttttttaatattttaaattcagctaACTTTTGTAAGAcggcatttaaataaaaagaaaaagaagaagaaattagAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64716 lncRNA downstream 79056 12657226 ~ 12660117 (-) True G51724
TU64717 lncRNA downstream 79056 12658484 ~ 12660117 (-) False G51724
TU64692 lncRNA downstream 134033 12601322 ~ 12605140 (-) False AMCG00008815
TU64684 lncRNA downstream 189556 12547400 ~ 12549617 (-) True G51707
TU64683 lncRNA downstream 198829 12539607 ~ 12540344 (-) True G51706
TU64823 lncRNA upstream 161359 12907321 ~ 12908333 (-) True G51809
TU64825 lncRNA upstream 174583 12920545 ~ 12920791 (-) True G51811
TU64876 lncRNA upstream 177242 12923204 ~ 12924656 (-) True G51851
TU64906 lncRNA upstream 276062 13022024 ~ 13023104 (-) True G51875
TU64988 lncRNA upstream 389770 13135732 ~ 13136309 (-) False AMCG00008844
AMCG00008823 mRNA downstream 3694 12725524 ~ 12735479 (-) True AMCG00008823
AMCG00008822 mRNA downstream 17984 12717117 ~ 12721189 (-) True AMCG00008822
AMCG00008816 mRNA downstream 70741 12665835 ~ 12668432 (-) True AMCG00008816
AMCG00008818 mRNA downstream 85228 12653613 ~ 12653945 (-) True AMCG00008818
AMCG00008817 mRNA downstream 87355 12641987 ~ 12651818 (-) True AMCG00008817
AMCG00008827 mRNA upstream 101045 12847007 ~ 12856225 (-) True AMCG00008827
AMCG00008826 mRNA upstream 117661 12863623 ~ 12884668 (-) True AMCG00008826
AMCG00008832 mRNA upstream 167574 12913536 ~ 12917796 (-) True AMCG00008832
AMCG00008833 mRNA upstream 180631 12926593 ~ 12942236 (-) True AMCG00008833
AMCG00008834 mRNA upstream 220386 12966348 ~ 12969537 (-) True AMCG00008834
TU64350 other downstream 1412814 11320810 ~ 11326359 (-) False AMCG00008777
TU64340 other downstream 1443423 11235642 ~ 11295750 (-) False AMCG00008777
TU64128 other downstream 1940019 10797632 ~ 10799154 (-) True G51250
TU64105 other downstream 2026688 10680278 ~ 10712485 (-) False G51241
TU64811 other upstream 144849 12890811 ~ 12891597 (-) True G51797
TU64813 other upstream 149373 12895335 ~ 12897134 (-) True G51799
TU64897 other upstream 254864 13000826 ~ 13001888 (-) True G51867
TU64926 other upstream 344575 13090537 ~ 13097934 (-) True AMCG00008845
TU65001 other upstream 511744 13257706 ~ 13261822 (-) True AMCG00008853

Expression Profile