RNA id: AMCG00008824


Basic Information

Item Value
RNA id AMCG00008824
length 2831
RNA type mRNA
GC content 0.63
exon number 11
gene id AMCG00008824
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12820798 ~ 12840200 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cacacacacactgacaggtaTAACCAGGTTACAGAGAGCGAgcgcgagagagaaagagagcaacaGACTGTGTCTAAAGGAACGCAGAACTCCAGAGTCAAACTTTGTCCAGCCACACACGGCAAGGCAAGAAagtagagagagggggggagaaaaagagagggagaaagacaaGACCAGGCAACCATAAGGCAGTGAGCTAGCAGCAGTGAGTGATGGCAGCCAGTCCGTTCAGCCGGCGGCAGTGGGGGTCACAGTCTCTGCGCATCACCGCCAAGGAGCTGTCCATCGTCAGCACCCGCGGCAAGAACACAGCCATCGCTGAGAGGTTCTCCAAGTATCAGAAGGCTGCAGAGGAGGCCAATGCAGAGAAGAAGAAACCTCCGGTGATCAGCGTCGCTGCCGCTGTAGAGAAACTCCAGCGTCGCTCCAGGGCGTCACAGAACGGCAGCGGCCCCAGCATTGAACCGCTGCCCTCCAGCTTGAGGCGGGGCAACCTGAGCGTGTTGAAAAAGAGGTGGGAGCAGCCACCACCCCCTGCCCACCAGGACCACCCCCCTGTGCCTAACCCTGTCCCCCGTGCCCGCCTCAATACCCCGCCTCCCGTGTCCAGCATCGCCAAGCCCCATCCCAGCCCCGGACACGCCCCCGggcccagccccagccccagtcCCGGTCAACAAAGCGTGGCTGCCACTAGGCCTCCAGGCCCCGAGTCCAGCCGCTTTCACTACCCCAGCCAGGGGGAGGGAGTGGCGGAGCAAGAGGGTGGGGTGTCGGAGGTGTCGGCCATGGAGAGGAGgctgtggagagagggagacggggcGGAGAGTGAGGGCCGGACAGGTGGTGCCAGCTCCCCGGGGGGCAGCGTCCACATCGAGAAGCCCAGCGTGCCGCTCACCAGCCTCAAGATGATGTTCGAGAAGGGGGAGGGGACACCCAGCAAGGTGTCCCGGGAGCCAGTCAGGATCGGGGGCTACAGCAACTCCACAGAGGACATGGAGCTGCGCCTGGGAGACAGAGGTCAGTTGGATGGGCTGTCGGGGTGCTCCACCCCAGAGCGGCTGCTGGAGGCCACCTCTCTGAAGGACCGAATGGCTAAGTACCAGGCCGCAGTGACCAAGCAGGAGGCCCTGCCCCCCGCCCACAGTAACAGCAGGAAGGGCTCCGTAGTGGAGAGCAATGGCACACGAATGGAGGGTGAGGGGGAGGTGAGAAAGATGTCTGCCTGCAGTGGGAACACGCAGACCTCGTCCGACAGTGGTGCACCCAGAGCACTCAGGAGGTTCTGCCCACCTGTGCGTGAGTCATGTGTGTCGTGTCAGAAAACCGTGTACCCGTTGGAGCGCCTGGTGGCCAATCAGCTAGTGTTTCACAAGGCCTGCTTCCGCTGCTCCCACTGCAGCAACCGTCTGAGCCTGGGGAACTTCGCCTCCCTGCATGGCAGTGTGTACTGCAAGCCGCACTTCAGCCAGCTGTTCAAGGCCAAGGGAAACTACGACGAGGGCTTCGGACACCGGCCGCACCGTGAGCTGTGGAGCGCACGCTctgagggggaggaggaggatgaggaggtggggggggagagagcaGGAAGTGccgaggaggtggaggagaagaaggagcgagggggaggggggcgggaGCGTTCCTTAGAAACGGCCTCCCCCGTGAAGCAGCAGAGCCCCCTAGTGGAGGAGTGCCCCCTGGCCAAGGTTAATGTCCTGGCCGCCAGCCTGGAGACTCGGGCACAGTTTGTCCCCGTGCCAGAGAGGGCCCCCGTGGACAAGCCAGCCGAGACCCGGAGGCTGAGGATCGCCTGGCCTCCCCCGAGTGACGAGGGCGAGAGGGCTCAGGGGGGCAGTCCCGTGAGTGGCGGGGGGGAGCTGGTAGGGGTCTCTTCCCCATTGGTACGCCCCTTCCGTGCCAAGTGGCCCCCTGATACGGAggcagaggtggggggggtgcagCAGAGCCCTGAGCGCAGTGAGATCAGCCGGCTACGCAGGAGCGCCTCCCTGAAGGAGAGGAGCCGGCCCTTCAGCCTGGCCCCTAGCCCCACCGCTGCCCCCACCCCCGCACCTGCACCCAGACGCCAGCAGAGGGAGCCAGGGGGCAGTGCAGCCCGACCACAGCCGGAAGAAGCAGAGAGGGAGGGCCGTCCCACACCAGCGCCGCGCAGCAAGGAgaggcagcaggaggaggaggaggaggagagggtggaaaaggagaggaaggagagggaggagaaggagaagaagcagAGGGAGGAGGCAAAAAGGAAAGAgcaggaggaggtggagaagaaggagagggaggaggtggagagggtggaaagagaaagaagggtgcgagagagggaggagaaagagagggaggaggtagagaggaaggagagggtggaaagagaaagaagggtgcgagagagggaggaggtagagaggaaggagagggtggaaagagaaagaagggtGCAtgtggagaaagagagggaggaggcaCTCTCCACTCAGGACAGTGTGCTGAATGGGGAGATGGCttcagaggaagaggaggaagcaaagactaaatgtagagagagggaggaggaggaggaagaggaggaggaggaagagctggAGCAGCCCTCCCCCGCCATGGCAGACCTCCATGCCTCACCCCCCTCACCCTCAAGCCAGGACGCCAAAGCTGACCGCTCCTTGCAAGACGTGGGCTTCTGGGaaggggaagaggaggaggagggccaAGGAGTGTCCGTGGAGGACCTGATCAAGAGAAACCGCTACTatgaggaggaagaagaggaagaggaggagagggaggactGA

Function

GO: NA

KEGG:

id description
K23026 LIMA1, EPLIN; LIM domain and actin-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64732 lncRNA upstream 75032 12739197 ~ 12745766 (+) True G51736
TU64731 lncRNA upstream 97818 12721082 ~ 12722980 (+) True G51735
TU64697 lncRNA upstream 172834 12646523 ~ 12647964 (+) True G51718
TU64687 lncRNA upstream 261099 12559471 ~ 12559699 (+) True G51710
TU64650 lncRNA upstream 271180 12548060 ~ 12549618 (+) True AMCG00008810
TU64810 lncRNA downstream 56149 12896349 ~ 12897107 (+) True G51796
TU64828 lncRNA downstream 87418 12927618 ~ 12927845 (+) True G51814
TU64844 lncRNA downstream 138664 12978864 ~ 12980775 (+) True G51828
TU64940 lncRNA downstream 300363 13140563 ~ 13187139 (+) True G51904
TU64982 lncRNA downstream 413614 13253814 ~ 13257640 (+) True G51939
AMCG00008825 mRNA upstream 10370 12803269 ~ 12810428 (+) True AMCG00008825
AMCG00008820 mRNA upstream 127297 12688197 ~ 12693501 (+) True AMCG00008820
AMCG00008813 mRNA upstream 158347 12660779 ~ 12662451 (+) True AMCG00008813
AMCG00008814 mRNA upstream 161066 12654567 ~ 12659732 (+) True AMCG00008814
AMCG00008819 mRNA upstream 251111 12569028 ~ 12569687 (+) True AMCG00008819
AMCG00008828 mRNA downstream 50802 12891002 ~ 12895612 (+) True AMCG00008828
AMCG00008830 mRNA downstream 59695 12899895 ~ 12907881 (+) True AMCG00008830
AMCG00008829 mRNA downstream 69485 12909685 ~ 12912736 (+) True AMCG00008829
AMCG00008831 mRNA downstream 118557 12958757 ~ 12962983 (+) True AMCG00008831
AMCG00008837 mRNA downstream 140744 12980944 ~ 12992725 (+) False AMCG00008837
TU64730 other upstream 104012 12715494 ~ 12716786 (+) True G51734
TU64384 other upstream 1355310 11460363 ~ 11465488 (+) True G51445
TU64201 other upstream 1780124 10984890 ~ 11040674 (+) False G51297
TU64057 other upstream 2113705 10705478 ~ 10707093 (+) False AMCG00008749
TU63914 other upstream 2889717 9929478 ~ 9931081 (+) False AMCG00008727
TU64761 other downstream 2515 12842715 ~ 12846233 (+) True G51756
TU64826 other downstream 85038 12925238 ~ 12926794 (+) True G51812
TU64845 other downstream 140604 12980804 ~ 12992492 (+) True AMCG00008837
TU64968 other downstream 382120 13222320 ~ 13224946 (+) True G51928
TU64983 other downstream 413978 13254178 ~ 13257640 (+) False G51939

Expression Profile