RNA id: AMCG00008825


Basic Information

Item Value
RNA id AMCG00008825
length 3802
RNA type mRNA
GC content 0.40
exon number 5
gene id AMCG00008825
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12803269 ~ 12810428 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATACCGGCTGTGTTTTAAAAGGCAGCGGGCAAAGCTGGGCTTGAATTTGTGAATTGCAGATGTTGGAGTGGCGATAGTCAACTGGGATCACAAAAATGGTTTTAATCACACTGATCCTGTACATCGTGCTCATTTCTGTGCTGCCAGTGATGAGTCTGACCCAAGGGTGCAAAGACAATGAGATCCAAACTCCATCAGGTTGCTGTTCGACTTGTGGGACAGGGCAATTCATATCAAATATTTGCTTTGAAGATCGAGGCGTGACCTGCAGTGACTGTAAAGCCTGCAATGGCAAGAACCAGATCCTCATCACCAGTTGCACTCCTCTCAATGACAGTGTGTGTGGCTGTCGGGATAACTACGATATCGCCAGCAGTGGAGAGTGTCGTGGACGACGGCTCCAGAAGATTCCGAACACGGCTGTATGACGGAACCAGTGGCAGCAGATGGGAATGTTATTGGAATTTGTAGCTGCTGGGCTTTAACAACACTACTTCAAACACACTGCCCTTCACTGTACAGCAGGGGACGTACTACTATCCTTCTATATATACTTCTCTGACCTTCTGGACGTAAGCAAGTCTGCAGCTAATCCACAGTTTCCAGTCTGaggtttttaataaaattattttaaagtagctCGGTTAGAAATTTGAAACAACTGAAAGTATGCTTCATGGTCTGAGGCTAAATATTCTCCCCTCTGTccatcatttaaaatcaatataggcaaaacaaaagagacagagagggagacggaggCAGTGATAGACAGGGAGCGAGTGGCAGcaatggagagggagggaaggtgAGAGGGCAGTGAtggagagaaagtgagagggcagcgatggagagggagagagtggcaGCGatcgagagggagagggagtgaagGCGAGAGAACAGTGATAGAGAAATGGGGACGTGATGATCCTGGCAGTGTTTGATATTCTGTAAACCATGGACAGTTGTTTTGACTGTATTTATGCTGGCAGGCCAATTTGCATTCAGAGCATAGATATTTATCACATAGTCACCTCCTTACTACCAAACATGGTGGTGTTactaattaatgaattaaatgtatatatatattattgcaaGGGCACTCCTTGCCCtctctgtgtgctgcaggtTCTAAAAGCGTTGCAATATGGCCTGCGAGTGGCCAGCCATCACATCTGAGATCAGGGAAACTAGGATGTAGTAATGATACTGCCAGaggatgaataataataattcctcaTGAGAAAATATGTGGATGCGTCAAAATATAggataaattatacatttgtatattattttgattaacagttatttggaatgtgaaaactgtaaaagtTTGCAATGGAAGAGTAATGTTATAACAGAGTACACTATCAAAAACATGACTTCATATCACTCGACACCCCTATAGCCTTCTGGACCTCCTATATAATGCACTAATCTCCACAAGCTCCTTTTGAGTCATTCAACCTTTGAAAGGCTGCTAGAATTGGTTAAATGAGCTTAAATGAGTCTATCACCACCTTGTGGACACTCTGAAATGCTGTAATCCGTTGGAAGGTTTtatatccattttattttgtattcattaccacatgttcagggttttattttgcacttttttacAATTTGCTCTTGAAAGCATTGTTAAGGGATTTATAATCCTATTTCTGTGCTCTAGCTACACTCTTTTATAAGGACTTGGCTCAGAGCACCATGCGAAGTAGGCCAGATGACCGTGATCACCGATTtgcatgtatacattatattaatgaataagtaaagtaaagtaagtaAAGCTTAGACAGTTCTTTTCCAGGGAACAAATCCACTGGATAGTAAAAATCTATGTTAGACGACTAAAATGTGAAGAGaaatttatctttttttcttttatccaCGCTGCAGACAGCATCAGCTTTGCACCTCTGATATCACAATAAATAGCAAGTTGCACACTGCTGCAGGGGTGTTCGACGCCCGCCTTGGGGGGAAGCACAGTGGCTGCTGGTTTATGTCCCAACAGCATCTCTCAACTATTCAATTAGTCATGGTTTTCTCAAGTAGGCTTATCTAAGACTTtctcattttagttttaaagttcATGTCTTCAAATATGTCGATTTACTCCAGCTATATTGTTcccacaaaacatttcagagtctggagagaagtttTCAATTCATTcagttaataatttaattaggcCAATTAAGGGGCCAaaagctgggctggaacaaaaaccaggagacaccccagccccccaggactggagtctaaCTGCCCTGCTATAGTGGAATGACCTTAAACTGATTGATAGTTTTAGTAAAGTTCCTTTAGCcgagtggttctcaaacctctCCCGGAGTACCATCTAcccagctgtttttttttttttttttgagctctcaattacttaattgattccttaattgatgtaatttgactctttaaattgatcaaaagttggttccttaatattTTCCTTCTATAATTTATACTTATCTTAAAACCCCTATTGTTATGTATTAAAAGGTTctgatttagaaaaatgttaGTTCATTTAAGgggtcaattaattaattgagagcttggttggaacaaaaaccagcagggtaggtagtactccaggacaggtttgagaaccactggttaAGCCTGTAtatcaggggtggctaaccctggtcctggagagctgcagggttaactgcttaattgaaccaattgtgggtgtttattaggcaaaatgtccagTGTGTTCAAGATGTCCAATGATTGGTagttagagagacctggaaaacctgcaggattgcggctttccaggaacagggttgggcACGTGTGCATGTGTAATACATTATACTCGCACACATACATAGTTTTAAAAAGTCAGTTGGTGCAAAGTTGAAGTGAAATCTCTCTCAATTAATTGTTCCACAGCCAGGGTGAAGTCCCTGTGCAAACAGTATATGCACTATGATAACTAGAATGGTATAATGACAATATGATAGCTGAAGTAATGGGATGAAACTCCGGACGCCAAAATACAAGTTATAGATGCGGGGGTGCCAGGCCAGCAGGTTCTGCTGCAGGAGGGAGAGCGAAGTAAATTGCTGGTGAATGTTTATAAGCACCCATGGGGGTGGAGAGGAAGACCAGTGACTTCTTTTGTAGGACGATAGCTGGGGAATTATAATTGGGATTCATTTGGAGAAAAGAGAACTGGATTGACTTCCAATGCTTCTGCTTATGTTGAAACAATCCTGTAAGCATTGCACTGCCACCATCCGAGTATTGTAATCAATGACAGATTCCTGCATCTCTTacaatccattttaaaatgttttttttttttttcaaaatgtaaaaataataatcaaaatctgCATTGAAAATGTCACGACCCACATTGGGATGAAGTTATTAACAATTCATTATTCTTCTATTAGGAGATTTATAGAATAACAAATGGAGTAATGGGTGGATAGATGAATGCATAGATCGATAGACAGAATAATTAGTCTTTTTTTATCAATAATgtgtaattgattgattaatgagCTTTTGAGTTCTATTAATAacctgaaataataataaacttataATAACCTGAGAAGCAACATTTATGTGCCCAAATCAAAAACTGACTGTTATACCTCCCAGCTGTGTGATctttgtcatttttcacatcTGACAATGCTATCATAAGGGGATGTTGTGTCATGTTTACAAATTGTGGAGATTcaatataatgttgtttttgaaaataaataaagcattggCTCTCTTAACCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64732 lncRNA upstream 57503 12739197 ~ 12745766 (+) True G51736
TU64731 lncRNA upstream 80289 12721082 ~ 12722980 (+) True G51735
TU64697 lncRNA upstream 155305 12646523 ~ 12647964 (+) True G51718
TU64687 lncRNA upstream 243570 12559471 ~ 12559699 (+) True G51710
TU64650 lncRNA upstream 253651 12548060 ~ 12549618 (+) True AMCG00008810
TU64810 lncRNA downstream 85921 12896349 ~ 12897107 (+) True G51796
TU64828 lncRNA downstream 117190 12927618 ~ 12927845 (+) True G51814
TU64844 lncRNA downstream 168436 12978864 ~ 12980775 (+) True G51828
TU64940 lncRNA downstream 330135 13140563 ~ 13187139 (+) True G51904
TU64982 lncRNA downstream 443386 13253814 ~ 13257640 (+) True G51939
AMCG00008820 mRNA upstream 109768 12688197 ~ 12693501 (+) True AMCG00008820
AMCG00008813 mRNA upstream 140818 12660779 ~ 12662451 (+) True AMCG00008813
AMCG00008814 mRNA upstream 143537 12654567 ~ 12659732 (+) True AMCG00008814
AMCG00008819 mRNA upstream 233582 12569028 ~ 12569687 (+) True AMCG00008819
AMCG00008810 mRNA upstream 254715 12539598 ~ 12548554 (+) False AMCG00008810
AMCG00008824 mRNA downstream 10370 12820798 ~ 12840200 (+) True AMCG00008824
AMCG00008828 mRNA downstream 80574 12891002 ~ 12895612 (+) True AMCG00008828
AMCG00008830 mRNA downstream 89467 12899895 ~ 12907881 (+) True AMCG00008830
AMCG00008829 mRNA downstream 99257 12909685 ~ 12912736 (+) True AMCG00008829
AMCG00008831 mRNA downstream 148329 12958757 ~ 12962983 (+) True AMCG00008831
TU64730 other upstream 86483 12715494 ~ 12716786 (+) True G51734
TU64384 other upstream 1337781 11460363 ~ 11465488 (+) True G51445
TU64201 other upstream 1762595 10984890 ~ 11040674 (+) False G51297
TU64057 other upstream 2096176 10705478 ~ 10707093 (+) False AMCG00008749
TU63913 other upstream 2872188 9929478 ~ 9931081 (+) False AMCG00008727
TU64761 other downstream 32287 12842715 ~ 12846233 (+) True G51756
TU64826 other downstream 114810 12925238 ~ 12926794 (+) True G51812
TU64845 other downstream 170376 12980804 ~ 12992492 (+) True AMCG00008837
TU64968 other downstream 411892 13222320 ~ 13224946 (+) True G51928
TU64983 other downstream 443750 13254178 ~ 13257640 (+) False G51939

Expression Profile