RNA id: AMCG00008828



Basic Information


Item Value
RNA id AMCG00008828
length 981
RNA type mRNA
GC content 0.61
exon number 4
gene id AMCG00008828
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12891002 ~ 12895612 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


agagagagagagagagagagagagagagagagagagcgggagagagagagagagtcaggaGAGTAGAGAGCCAAACAGAGAGGAGGAAAGCACAAGTCTCAGaaggagagaaaagaagaagagagaagaggaaagaagagaagagaacaCCAACAACCAACAACAAAGATACAGACATTAAGACTTTTTccattgaattattattactattaggtTTTTTTAAACTTCTGGAACCAGAGACTGCCACCGCTGCCCTGTGCTCGCTCTCACCATGCCAACTCTCCCACGCCTGCCTGCCCTTCTGCTGACCCTGGCCTGCCTGCGCTGCCTGGCCCTGAGTGCCCGCCTGCCTCCCCCCCGGGGCTGCCCGTCCTGCAGAGAGGCAGGGGCCGCACGGGGGCTTCGGGAGCCGAGTGCGGAGGGGTCCACAGCCACGCTGGGCATCGGGGAGCCCTGTGGCGTGTACACACTGAGCTGCGCCAAGGGGCTGCGCTGCGTGCCCACCCCTGGGGAGAGGAGCCCCCTGCAAGCTCTGCTCCAGGGCCGTGGCATCTGCACCAGGAACCTGGCACCCAGCAAGCCCAAGAATCGCACCACAGGCCCACCAGTTGTTAAGGTCACCACTGGCAACGCGGAGGAAAACgCCCCCTGCCGCCAGCTCCTCAATGCAGTGCTGCTGGGCCTGAAGCCCACCTGCCGCTCTTCCAAGGGCACCCAGAGGGGTGAGTGCTGGTGTGTGGACGAGCTCGGCCAGCTGCTGCCCTCCCCTGACCGGGACCCGGCCACCCTGCGTTGCGAAAGGGAGTGAGGGAGCTTGGCACCCcgtggaggagagagagaaggcgaGAGGTGGAAAGAAAGGGAGgatggagaaggagagaggaggaggaggaggaggaagaccaCAGTGTGTGCTGGACACTGCACGTCCCCATCCCACCCCCCAACCCATCCCAGAGAGATGCAGGCCACAGACtggga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU64732 lncRNA upstream 145236 12739197 ~ 12745766 (+) True G51736
TU64731 lncRNA upstream 168022 12721082 ~ 12722980 (+) True G51735
TU64697 lncRNA upstream 243038 12646523 ~ 12647964 (+) True G51718
TU64687 lncRNA upstream 331303 12559471 ~ 12559699 (+) True G51710
TU64650 lncRNA upstream 341384 12548060 ~ 12549618 (+) True AMCG00008810
TU64810 lncRNA downstream 737 12896349 ~ 12897107 (+) True G51796
TU64828 lncRNA downstream 32006 12927618 ~ 12927845 (+) True G51814
TU64844 lncRNA downstream 83252 12978864 ~ 12980775 (+) True G51828
TU64940 lncRNA downstream 244951 13140563 ~ 13187139 (+) True G51904
TU64982 lncRNA downstream 358202 13253814 ~ 13257640 (+) True G51939
AMCG00008824 mRNA upstream 50802 12820798 ~ 12840200 (+) True AMCG00008824
AMCG00008825 mRNA upstream 80574 12803269 ~ 12810428 (+) True AMCG00008825
AMCG00008820 mRNA upstream 197501 12688197 ~ 12693501 (+) True AMCG00008820
AMCG00008813 mRNA upstream 228551 12660779 ~ 12662451 (+) True AMCG00008813
AMCG00008814 mRNA upstream 231270 12654567 ~ 12659732 (+) True AMCG00008814
AMCG00008830 mRNA downstream 4283 12899895 ~ 12907881 (+) True AMCG00008830
AMCG00008829 mRNA downstream 14073 12909685 ~ 12912736 (+) True AMCG00008829
AMCG00008831 mRNA downstream 63145 12958757 ~ 12962983 (+) True AMCG00008831
AMCG00008837 mRNA downstream 85332 12980944 ~ 12992725 (+) False AMCG00008837
AMCG00008836 mRNA downstream 101486 12997098 ~ 13002084 (+) True AMCG00008836
TU64761 other upstream 44769 12842715 ~ 12846233 (+) True G51756
TU64730 other upstream 174216 12715494 ~ 12716786 (+) True G51734
TU64384 other upstream 1425514 11460363 ~ 11465488 (+) True G51445
TU64201 other upstream 1850328 10984890 ~ 11040674 (+) False G51297
TU64057 other upstream 2183909 10705478 ~ 10707093 (+) False AMCG00008749
TU64826 other downstream 29626 12925238 ~ 12926794 (+) True G51812
TU64845 other downstream 85192 12980804 ~ 12992492 (+) True AMCG00008837
TU64968 other downstream 326708 13222320 ~ 13224946 (+) True G51928
TU64983 other downstream 358566 13254178 ~ 13257640 (+) False G51939
TU65027 other downstream 411120 13306732 ~ 13309430 (+) False AMCG00008856

Expression Profile