RNA id: AMCG00008829


Basic Information

Item Value
RNA id AMCG00008829
length 2045
RNA type mRNA
GC content 0.55
exon number 2
gene id AMCG00008829
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12909685 ~ 12912736 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCCCAGACTGTCTCCGCACAACGCAGTGGCTGCTATCTCTGCACACTTGGCTCCTGCCCAATCTTCGAAACAACAACCTCCCCCGtacccccatctctctctccaactCACAGCTGCGCGCCCGGTCCTCCAGCATCCAGCGTCCAGTCCGgctACCCACCACCATGCACGCCCACAATGCGTCAGAGGCCAACCACTTGGACACTAACTTCTCCATGCCCTGGTTCGTGTACGAATGCACACTGGAGCTGGATGTGCAGTATCGGCGGATCACGCTGTTCCTGCTCTACCTGCTAGTGTTTGTGGCTGGGCTGGCGGAGAACGGGCTGGTGGTGTGGGTCAACTGGCGCCGGCGCCACTCTCGAAGCGCAGTCACCTTCTGCGTGCTCAACGTGTGCCTGGCAGACCTGGTCATGGTGCTGGTGCTGCCCTTCTACATGCTGGAGGTGGCGCTGCACAACGTGTGGCTGTGGGGCCGGGCCCTGTGCAAGATCAGCCACCTGCTGTACATGGCCAACTTCTACGGCGGCACCTTCTTCCTCGCCTACATGGCGGTGGAGCGCTACCTGGCCCTGGTGCAGCCCCCACCCAGCTGGGGCCCACAGGAGAAGCGACGGCGGGCGCTGGTGTGTGGAGGGCTGTGGGCCCTGGCCCTGTTCCTCACTGTCCTTGAGAACGTGCACGTGGACCTGCTAGAGTGGGATGAGCCCGGCTGCTATATGATCCCTGAACACAGCTACACGGAGTGGTACACCACCCTCACCATGCTGTCCATAGTCTTCCAGTTCCTGCTGCCAGGCGCGGTCATCATCACTTTCAACGTGCTCCTGGCCCGCGCTGTGCGCTCAGCCCCTGGGGTGGAGGGCCGGCGCGACACTTGGGTGGTGCACCTGTACTCCCTGGTGTTCGTGCTGTGCTACCTGCCCTATCACCTGATCATGGTCCTGCTGATGGTGGATGAACTTTTACCCCTGGCCTTCAGCTGCAACATGATGGAGTTCCTGTACTTCTCTTACAGCATCATGCAGTGCCTGTCACTCTTCCACTGCATTGCCAATCCCATCCTCTACAACTTTCTGAGCCCTGCCTTCCGCACGCATCTCGTCAATGCTCTGCTGAGCCACCTCTCCCGCACCCCTGCCCCCACCAACCAACTCAACGCCAACACCAATGCCAAATCTGCCAGCCCCCCTGTccaggaagggagagagatcCAGGATTCGGACACCAGCCACTCGGACATTGTGACGTAAAGGAAAACGCATCCAGAAAACGACAACGCAGGAAGCGCAGTTTCTGCACCAAGAACACCGTGTGATGCAGCATGCAAGCCTAACATCGCGCCGCCAGcacatccatttttttttattttttataatacatattgtgtCTCCTGTGCATATTCTCATATTCTCTACAGACCAGATCTGAACACGAcctaaacaaacacagcaacatGACACAGACGCATCTCGAATGCCCTTGTCAGAACTGTGCTCCAACCCCTCACTGGTGTCCCTGACCAGGACAGAAGATACAGAAACTACAAGCTTGCAAAGTCGAGCAAAATATTTCAAGGACCTCTTCTTGGGTTTTCAGGTCACCTTCCAACAGATAAATCTCTCCCGGCGACTCAGCGGCGAGCGCCTGCGAACGCAAGGAAGGAAGCACTTTTCACAGCTTCCTCCTGTGTAAACATGGCAGCAGAGTCttgatttatttcactgatatgtcttttattattcttggaattattatttttttacatatccTTACTATGTAAAGTCAACATCCATGAGCTGTACAACCACACAGGTGTTGCGATTATTTCCTGTGCAGAAAGTGTTCCTGCTGTGGAGAGGGcagcctgggggggggggcagggaagATGCTGTTGAGGTCTATATTAACTCGTGTACCTTAACGCCTGTATACTGTTGCACCCCTAATCTGTTTCGGCTCAATCAAGTATGAACCCAtcaccttttaaataaaaatgtacatggcAACACAACCAGACTGATTTTCTCTCCTGTCAGTCCag

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0004871 obsolete signal transducer activity molecular_function

KEGG:

id description
K04242 ADMR; adrenomedullin receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64810 lncRNA upstream 12578 12896349 ~ 12897107 (+) True G51796
TU64732 lncRNA upstream 163919 12739197 ~ 12745766 (+) True G51736
TU64731 lncRNA upstream 186705 12721082 ~ 12722980 (+) True G51735
TU64697 lncRNA upstream 261721 12646523 ~ 12647964 (+) True G51718
TU64687 lncRNA upstream 349986 12559471 ~ 12559699 (+) True G51710
TU64828 lncRNA downstream 14882 12927618 ~ 12927845 (+) True G51814
TU64844 lncRNA downstream 66128 12978864 ~ 12980775 (+) True G51828
TU64940 lncRNA downstream 227827 13140563 ~ 13187139 (+) True G51904
TU64982 lncRNA downstream 341078 13253814 ~ 13257640 (+) True G51939
TU65028 lncRNA downstream 396880 13309616 ~ 13310773 (+) True G51968
AMCG00008830 mRNA upstream 1804 12899895 ~ 12907881 (+) True AMCG00008830
AMCG00008828 mRNA upstream 14073 12891002 ~ 12895612 (+) True AMCG00008828
AMCG00008824 mRNA upstream 69485 12820798 ~ 12840200 (+) True AMCG00008824
AMCG00008825 mRNA upstream 99257 12803269 ~ 12810428 (+) True AMCG00008825
AMCG00008820 mRNA upstream 216184 12688197 ~ 12693501 (+) True AMCG00008820
AMCG00008831 mRNA downstream 46021 12958757 ~ 12962983 (+) True AMCG00008831
AMCG00008837 mRNA downstream 68208 12980944 ~ 12992725 (+) False AMCG00008837
AMCG00008836 mRNA downstream 84362 12997098 ~ 13002084 (+) True AMCG00008836
AMCG00008838 mRNA downstream 92866 13005602 ~ 13014133 (+) True AMCG00008838
AMCG00008835 mRNA downstream 150759 13063495 ~ 13065081 (+) True AMCG00008835
TU64761 other upstream 63452 12842715 ~ 12846233 (+) True G51756
TU64730 other upstream 192899 12715494 ~ 12716786 (+) True G51734
TU64384 other upstream 1444197 11460363 ~ 11465488 (+) True G51445
TU64201 other upstream 1869011 10984890 ~ 11040674 (+) False G51297
TU64057 other upstream 2202592 10705478 ~ 10707093 (+) False AMCG00008749
TU64826 other downstream 12502 12925238 ~ 12926794 (+) True G51812
TU64845 other downstream 68068 12980804 ~ 12992492 (+) True AMCG00008837
TU64968 other downstream 309584 13222320 ~ 13224946 (+) True G51928
TU64983 other downstream 341442 13254178 ~ 13257640 (+) False G51939
TU65027 other downstream 393996 13306732 ~ 13309430 (+) False AMCG00008856

Expression Profile