RNA id: AMCG00008831



Basic Information


Item Value
RNA id AMCG00008831
length 468
RNA type mRNA
GC content 0.62
exon number 5
gene id AMCG00008831
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12958757 ~ 12962983 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCCGCTGGTGGGTCTGCTCCTGATCGGCGTGGCAGCCTGGGGGAAGGGCTTTGGCATCGTGTCCAGCATCCACATCATCGGGGGCGTGATCGCAGTGGGCGTGTTCCTGCTGCTCATCGCCATCGTTGGCCTAATCGGGGCCCTTAACCACCACCAGTTTGGGGTGTCCTGCTCCTGCCTGGCCATTAACCGCGAGCAGCAGGTTGGTCAGCAGCCGCCCGTCATCCTGTTGCACTCTGTCACTCAgcgtgaGAAGCTGCTGAACGCCTCATGGGGTTTGATGGGTAACGAGACGCGCCGGGACCTGGAGACGCGGCTGAACTGCTGTGGGCTGCTGAACGTGACCCGCAGCCGCGCGCAGTTCAACAGCGACGTGTTTACCTGCAACGCGATCCTGGGTGTGTGGCTGGCTGTGCGCTACAGGAACCAGAAAGATCCCAGAGCCAACCCCAGTGCCTTCCTatag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU64828 lncRNA upstream 30912 12927618 ~ 12927845 (+) True G51814
TU64810 lncRNA upstream 61650 12896349 ~ 12897107 (+) True G51796
TU64732 lncRNA upstream 212991 12739197 ~ 12745766 (+) True G51736
TU64731 lncRNA upstream 235777 12721082 ~ 12722980 (+) True G51735
TU64697 lncRNA upstream 310793 12646523 ~ 12647964 (+) True G51718
TU64844 lncRNA downstream 15881 12978864 ~ 12980775 (+) True G51828
TU64940 lncRNA downstream 177580 13140563 ~ 13187139 (+) True G51904
TU64982 lncRNA downstream 290831 13253814 ~ 13257640 (+) True G51939
TU65028 lncRNA downstream 346633 13309616 ~ 13310773 (+) True G51968
TU65029 lncRNA downstream 348346 13311329 ~ 13312458 (+) True G51969
AMCG00008829 mRNA upstream 46021 12909685 ~ 12912736 (+) True AMCG00008829
AMCG00008830 mRNA upstream 50876 12899895 ~ 12907881 (+) True AMCG00008830
AMCG00008828 mRNA upstream 63145 12891002 ~ 12895612 (+) True AMCG00008828
AMCG00008824 mRNA upstream 118557 12820798 ~ 12840200 (+) True AMCG00008824
AMCG00008825 mRNA upstream 148329 12803269 ~ 12810428 (+) True AMCG00008825
AMCG00008837 mRNA downstream 17961 12980944 ~ 12992725 (+) False AMCG00008837
AMCG00008836 mRNA downstream 34115 12997098 ~ 13002084 (+) True AMCG00008836
AMCG00008838 mRNA downstream 42619 13005602 ~ 13014133 (+) True AMCG00008838
AMCG00008835 mRNA downstream 100512 13063495 ~ 13065081 (+) True AMCG00008835
AMCG00008840 mRNA downstream 111097 13074080 ~ 13097915 (+) True AMCG00008840
TU64826 other upstream 31963 12925238 ~ 12926794 (+) True G51812
TU64761 other upstream 112524 12842715 ~ 12846233 (+) True G51756
TU64730 other upstream 241971 12715494 ~ 12716786 (+) True G51734
TU64384 other upstream 1493269 11460363 ~ 11465488 (+) True G51445
TU64201 other upstream 1918083 10984890 ~ 11040674 (+) False G51297
TU64845 other downstream 17821 12980804 ~ 12992492 (+) True AMCG00008837
TU64968 other downstream 259337 13222320 ~ 13224946 (+) True G51928
TU64983 other downstream 291195 13254178 ~ 13257640 (+) False G51939
TU65027 other downstream 343749 13306732 ~ 13309430 (+) False AMCG00008856
TU65505 other downstream 1518938 14481921 ~ 14483255 (+) True G52349

Expression Profile