RNA id: AMCG00008838


Basic Information

Item Value
RNA id AMCG00008838
length 2571
RNA type mRNA
GC content 0.56
exon number 9
gene id AMCG00008838
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13005602 ~ 13014133 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAAGACCCAAAAGTGTCGCATCCTCTCCGGTCCTTTGGCCTCACAAGGAAAGATGCTGCAAGCTCTGAAAGTCAGCGCCCCGGTTCTGCGGTGGCTGGAGAGATGGGGGGAGAGCGGAGCCTTGCGGGCGACCAAGGGGGCAGCTGTGAAGACCCTGGCGGAGATGCCCGGACCCTCCGCCCTCGGGTTCGCTTGGGACCTCTTCGCCCGGGGGGGTCTGTCCCGCTTGCATGAACTACAGGCGGAGGGCCTGTCCCGGTATGGCCCGGTGTGGAAGGCGAGTTTTGGGCCAATCCTGACGGTGCATGTGGCTGAGCCGGCGCTGATCGAGGAGGTTCTGAGGCAAGAGGGCCAGCACCCAATCCGCTCAGACCTCTCCTCCTGGAAGGACTACCGGCAACAGCGCGGACACTCCTACGGCCTACTGACCTCggagggggaggagtgGCAGAGAGTGCGCAGTCTCCTGGGCAAGCAGATGCTGTGCCCACGGGCAGTAGGGGCGCTGGGCGAGGGGCTGAACGCCGTGGTCACTGACCTCCTGACCCGCCTGCAGCTGCGCCGCCGCCGCCACCCTGCCGGCCTCGTCACCGATGTCACACAGGAATTCTACCGCTATGGCCTGGAAGAGACGGAACGCTTCGTGGCGTCGCTGGGCAGCATGTTCTCTCTTACCCTACTCACCATGGCGATGCCCCACTGGCTACACCGCCTGCTGCCCCAGCCCTGGCAGCGCTTCTGCGCCAGTTGGGATTACATGTTCCAGTTCGCGCAGGGGCACATCGACAAGCGTCTGTCAGAGGAGGCGGAGCGCGTGGCGCGGGGGGAGGGCCGGGGGGGGCAGTACCTGGCCTCCTTCCTGTCCCAGCAGGGCCTGTCCATGAAGGATGTGTACGGCAACGTGACTGAGCTGCTACTGGCCGGGGTGGATACGatctcCAGTTCCCTGTCATGGAGTCTGTACGAGCTGTCCCGGGCCCCCGAGCTGCAGAGCTTAGTGAGGGAGGAGGTGGAGGCAGTGATGGGGGGGCGTGCAGTGCCAGAGTCCACAGACATTGCACAAATGCCGCTGCTGAAGGCTGTGGTCAAGGAGGTGCTAAGACTGTATCCTGTGATTCCTGCCAATGCCCGACCGGACCAGTTCTGTCCACAGCGCTGGCTGGACCGGACACACAGCCCGAATCCCTTTGCCACGCTGCCCTTCGGCGTGGGCAAGAGGAGCTGCATCGGCCGACGCATCGCCCTGCTGGAGCTGCACCTCGCCCTGGCACGGATCCTGACCCACTTCGAGGTCCGGCCTGACCCAGCGGGAGGAGAGGTCCGACCCATGACCAGAACCCTGCTGGTACCAGCATCTCCAATCAACCTGCAGCTCAATGAGCGCTGACGGTGCTGCCGGCCCAGAGAGCTCACCCCGACATCCCTCCTCCAGGAGGACTGAAGAATCCTGGGCCTGGGAGCTGGGCATAACTTGAGCCCCAAGCTGCGGAGGCCCAGGGTCTGAAAAGTGAGCAGTGCCGCAGTGCAGGGGAACCGGCGCCTTTTGCCAAATAGACAGCGGAGGGGCAGCTGTGTGGGGTGGCTTGAGTGTCAGCCCAACACAGACAGGACAGGTTCCACCACAGCTGGCATAGCCGGGTCCTGCAGGGCTTCAGCCTCTCGTGGGTTCCATTAATGCCAAACCCGTTAACTGATTCGATTAGCGGGGTGTAATTTGTCCCAGTTCCAGCTTACCCAGGGACTGGAGACTTGCAGAGAGAGCTGTGCTGCCTGCAGgactgtctctttctctctctcctggatcaGGGTCACCCACTAACTGCTCTAGTACAGCACGTGTATGCAAATCTGTTCGCCCCCCATTGTCTAGTTACCAAGTGTAATCAGATGCCTATGGCATCACTCTAAGGCCTTTTACAGTTCAAAGCTACAGATCCTGCTTATTCAATTAACATATTCAAGTATCACCGGCAGCCTGGAGACAATTCATTAAATCACCCCAACAATGGCAGATCAGACCAATTAAGTTACTAGGAGCAGCTGGGAGAGCAAGAACAACGGTGAGAGGAAACTGCCCTTGTTTGCCGctcttaattcattaattagaTAACTCCTCAAATACAGAACCTCCCCATCCCTTACCCAGTGTTTGAAACTTActcttttctatattttgtctttattgatGCGACGCATCAGAAGTTTATTTGTTCGGTTGTGTCAGTCCCCCATGCTGTGACACCGTTCTTTGCAAAAGTTTTatttatggatgtatttattgattaatttatgcatttatttattttcatactgcCAGAGGCAACAATTAAAGGGTCACACTGGCATTTAATTACGCCACAACTGTGACGGACAGGACACAATTCAGCCACAATCAgtgaacactgtgtatccacACTGTAGCAGTTGTTTTACTCGTGTATCAGCCTTTCTTAAAAGTCCACAAATACTGTGACTGGTGCTTCTATGACTGTTACTGtgtcatctgtgtttttgttttcctgtgcctttatttaatttcataattattcAATAAAAGGGTCATACATACA

Function

GO: NA

KEGG:

id description
K07438 CYP27B1; calcidiol 1-monooxygenase (25-hydroxyvitamin D3 1alpha-hydroxylase)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64844 lncRNA upstream 24827 12978864 ~ 12980775 (+) True G51828
TU64828 lncRNA upstream 77757 12927618 ~ 12927845 (+) True G51814
TU64810 lncRNA upstream 108495 12896349 ~ 12897107 (+) True G51796
TU64732 lncRNA upstream 259836 12739197 ~ 12745766 (+) True G51736
TU64731 lncRNA upstream 282622 12721082 ~ 12722980 (+) True G51735
TU64940 lncRNA downstream 126430 13140563 ~ 13187139 (+) True G51904
TU64982 lncRNA downstream 239681 13253814 ~ 13257640 (+) True G51939
TU65028 lncRNA downstream 295483 13309616 ~ 13310773 (+) True G51968
TU65029 lncRNA downstream 297196 13311329 ~ 13312458 (+) True G51969
TU65030 lncRNA downstream 299457 13313590 ~ 13315052 (+) True G51970
AMCG00008836 mRNA upstream 3518 12997098 ~ 13002084 (+) True AMCG00008836
AMCG00008837 mRNA upstream 12877 12980944 ~ 12992725 (+) False AMCG00008837
AMCG00008831 mRNA upstream 42619 12958757 ~ 12962983 (+) True AMCG00008831
AMCG00008829 mRNA upstream 92866 12909685 ~ 12912736 (+) True AMCG00008829
AMCG00008830 mRNA upstream 97721 12899895 ~ 12907881 (+) True AMCG00008830
AMCG00008835 mRNA downstream 49362 13063495 ~ 13065081 (+) True AMCG00008835
AMCG00008840 mRNA downstream 59947 13074080 ~ 13097915 (+) True AMCG00008840
AMCG00008841 mRNA downstream 91393 13105526 ~ 13117044 (+) True AMCG00008841
AMCG00008842 mRNA downstream 109098 13123231 ~ 13132675 (+) True AMCG00008842
AMCG00008847 mRNA downstream 267141 13281274 ~ 13288925 (+) True AMCG00008847
TU64845 other upstream 13110 12980804 ~ 12992492 (+) True AMCG00008837
TU64826 other upstream 78808 12925238 ~ 12926794 (+) True G51812
TU64761 other upstream 159369 12842715 ~ 12846233 (+) True G51756
TU64730 other upstream 288816 12715494 ~ 12716786 (+) True G51734
TU64384 other upstream 1540114 11460363 ~ 11465488 (+) True G51445
TU64968 other downstream 208187 13222320 ~ 13224946 (+) True G51928
TU64983 other downstream 240045 13254178 ~ 13257640 (+) False G51939
TU65027 other downstream 292599 13306732 ~ 13309430 (+) False AMCG00008856
TU65505 other downstream 1467788 14481921 ~ 14483255 (+) True G52349
TU65523 other downstream 1513685 14527818 ~ 14540958 (+) False AMCG00008910

Expression Profile