RNA id: AMCG00008842


Basic Information

Item Value
RNA id AMCG00008842
length 1782
RNA type mRNA
GC content 0.60
exon number 14
gene id AMCG00008842
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13123231 ~ 13132675 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACCCCCTGGGAATTTGCATTCCAGAGTCAGCGGTGTTGAAACTCTGCACACTGCGAGTGGCAGGGGGCAGGAAGAAGCTCCCCCTGCCAATTACACTTGGGAGCAAACTGATCAGTCACAAGCAGACGGCCTGTGACTCTGGCATCCCGGAGAcccttcagccctgcccctcgGTCGGTCAGCTCATCTGCACTCCTaaaatgGAGCTTGTGTTACTGCCAGAGAAGGCCTATGGAAACTTCTTTGAGGGAGACTGCTACCTCCTGCTGTCTACGCGGAAGTGTGGCAAATCTGTGTCCTATGATGCTCATTACTGGATCGGGGCGGAGTCATCTCAGGACGAGCAGGGGGCAGCGGCCATCTACATCACCCAGCTGGACACTCACCTGGGCGGACGGCCAATCCAGCACCGCGAAGTCCAGGGCTACGAGTCCGACACCTTCAGGGCCTACTTCAAACAGGGAATCATGTGGGGGATGGCTCTCTGTAAGGACATCCGGGACCGCGAGCGGGGGGGGCGGGCAGAGGTGGGCGTGGTGGACAGTGAAAAGGAGGGGGATGCCCCAGAGCTGATGGCAATCCTGGAGGGGGTGCTGGGGAAGCGAGAGGGTCAGCTAGTCAACGGGACGCCCGACGAGGAAGCCGACCTGGAGCAGAAAAGCTGCATCACTCTGTACCATGTGGAGGCGATGAGCGACGGCGCTGAGTCGGCCCTGTTCACACAGCTGTTCCCCAGCTGGTCCAGCCGGGACCAGAGCCAGGGCATGGGCCGTGTCTACAATGTGGGCAAAGTTGCCAAAGTATCCCAGGATAAGTTTGACGCATCTCTGATGCACTCCCAGCCTGACGTGGCTGCTCAGGAGCGCATGGTGGATGATGGCACTGGGGAGGTGCAGGTGTGGCGGATCGAAAACTTGGAACTGGTCCTTGTGGACAGGAAGTGGCATGGCTTCTTCTATGGCGGAGACTGCTACCTCATCCTGTACAGCTACGAGGTGAACCGCAGGAAGAACTACCTGCTGTACATATGGCAGGGTCGACATTCCTCCCAGGACGAGATCACAGCCTCTGCGTTCCAGGCGGTCAGTCTGGACCAGAAGTACGGTGGTCAGCCGGTCCAGGTCAGGGTCACCATGGGCAAGGAGCCACGGCACTTCATGGCTATGTTCAAGGGCAGGGTGGTCATCTTCGAGGGCGGTACCTCTCGGGTGGGGAACACAGACCCTGAGCCGCCGGTCCGGCTGTTCCAGGTGCGCGGTACCGACCCGTGCAACACAAAGGCTGTGGAGCAGGAAGTCCCGGATCACCAGGCCCGCCTCTTCGAGTGCTCCAACAAGACGGGCCGCTTCATCGTTATTGAGGTGACACTGTTCACCCAGGACGACCTCACCGAGAGTGACGTCATGCTGCTGGACACCTGGGACCAGGTGTTCCTGTGGCTGGGCTCAGGGTCCAGtgagatagagagggaggagTCAATTAACACCTGTCGGGAGTACCTGTATACTCACCCTGGGGGTCGCGACCCCGACACGCCCATTCTGCTGGACCTGAATGGCACTGCAGAGGAGACCCCCCGGGTGCTGGAGACCCACCCCCGCGACAGCCTGCTGTACAAGCAGACCGAAGAGCTGCCCAAGGGAGTGGACCCATCGCAGAAGGAGagacACCTGTCGGACGAGGATTTCCAGGCGGTGCTGGGGGTCAGTAAGGATGAGTTCTACACTCTGCCGCAGTGGAAACAGCTCAGCATGAAGAAGAAGACAGGGCTGTTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64844 lncRNA upstream 142456 12978864 ~ 12980775 (+) True G51828
TU64828 lncRNA upstream 195386 12927618 ~ 12927845 (+) True G51814
TU64810 lncRNA upstream 226124 12896349 ~ 12897107 (+) True G51796
TU64732 lncRNA upstream 377465 12739197 ~ 12745766 (+) True G51736
TU64731 lncRNA upstream 400251 12721082 ~ 12722980 (+) True G51735
TU64940 lncRNA downstream 7888 13140563 ~ 13187139 (+) True G51904
TU64982 lncRNA downstream 121139 13253814 ~ 13257640 (+) True G51939
TU65028 lncRNA downstream 176941 13309616 ~ 13310773 (+) True G51968
TU65029 lncRNA downstream 178654 13311329 ~ 13312458 (+) True G51969
TU65030 lncRNA downstream 180915 13313590 ~ 13315052 (+) True G51970
AMCG00008841 mRNA upstream 6187 13105526 ~ 13117044 (+) True AMCG00008841
AMCG00008840 mRNA upstream 25316 13074080 ~ 13097915 (+) True AMCG00008840
AMCG00008835 mRNA upstream 58150 13063495 ~ 13065081 (+) True AMCG00008835
AMCG00008838 mRNA upstream 109098 13005602 ~ 13014133 (+) True AMCG00008838
AMCG00008836 mRNA upstream 121147 12997098 ~ 13002084 (+) True AMCG00008836
AMCG00008847 mRNA downstream 148599 13281274 ~ 13288925 (+) True AMCG00008847
AMCG00008858 mRNA downstream 166631 13299306 ~ 13302628 (+) True AMCG00008858
AMCG00008856 mRNA downstream 173820 13306495 ~ 13309244 (+) True AMCG00008856
AMCG00008857 mRNA downstream 201090 13333765 ~ 13347362 (+) True AMCG00008857
AMCG00008855 mRNA downstream 222730 13355405 ~ 13366105 (+) True AMCG00008855
TU64845 other upstream 130739 12980804 ~ 12992492 (+) True AMCG00008837
TU64826 other upstream 196437 12925238 ~ 12926794 (+) True G51812
TU64761 other upstream 276998 12842715 ~ 12846233 (+) True G51756
TU64730 other upstream 406445 12715494 ~ 12716786 (+) True G51734
TU64384 other upstream 1657743 11460363 ~ 11465488 (+) True G51445
TU64968 other downstream 89645 13222320 ~ 13224946 (+) True G51928
TU64983 other downstream 121503 13254178 ~ 13257640 (+) False G51939
TU65027 other downstream 174057 13306732 ~ 13309430 (+) False AMCG00008856
TU65505 other downstream 1349246 14481921 ~ 14483255 (+) True G52349
TU65523 other downstream 1395143 14527818 ~ 14540958 (+) False AMCG00008910

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007285 False 2645 mRNA 0.56 20 NC_007122.7 169394 ~ 183328 (-)