RNA id: AMCG00008844


Basic Information

Item Value
RNA id AMCG00008844
length 1020
RNA type mRNA
GC content 0.57
exon number 3
gene id AMCG00008844
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13135732 ~ 13184356 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCAAAGTAAAAGTTTCGGTGGAGACAGACCTCAGGACTCTGAGCCCAGAAGCTGCGGAGTTCTTCTGGATCAAGTACAGGTGGTGGTGCAGCCCCACTGGTACACTCAGCATGACAGGCACAGCTGAAGAAATGGACAGTTTCCTCCAAGATGTCTACCAGTTTCAACCTGAATCCAGGAGGCTCCTGGCTGGCTTGGGAGGGGCTGGTGGGACAATCACTGTGCCTGCCGTGCAGTATGACCACCTCAGCAAGTCCTACAAGAGGGAGCTCGAACAGATCAAAAGTGACAACAGGGTGGAGATGGAAGCCGTGGTCTCTGTGTCTTTCAAGCCTGGGAAAGAGGGCCAGGCCATGGTGGAGAGAGCCCAGAATGACTTTATCAGGCTGGTCCACAAAATTGCTCCCAAACTCGGAGGCATCCAGATCCCAGATGCTAGCCTGAGAGACTCCACTGGGACCCTGTCCTGCACCCTGCTGAACCCCAAACAGACGGAGAGGGTGAAGGCGGTGTTTGGACAGATCCGTGAGAGACACCCCAACATAGCGACTGGAGAGAAGTACAGGGACTGGAAGCTGATTGGCCTGCCGGAGCACCTTGGCCCCGCGGTGAGGGATGTGGAGCAGAAACTGGGCGGACCAGCCTTCAAGGAAGGGGTGAGACTGAGGAGAAGGTTGGGGGGGTGCTCACTGGAGCCCCCggggcagcaggaggaggagcaggaggcgGACAAGCACCCCAAGCCAGGCAGACGTTTCATTGGAACCTCGAGGACGGCCTACCTGCCTGACAGCCCCGAGGGCAACGAGGTGCTGGGGCTGCTCCAGAAAGCCTTCGACCAGAATCTGATCTTCACTGTGGGCACCTCCAGGACCATCGGGTCCGAGGACACTGTCACCTGGAACGACATCCATCACAAAACTAATATGCACGGTGGACCTCAGAGGTTCGGCTATCCTGACCCTGACTACCTGAAGAGGGTGAAGGAGGAGCTGAAAGCCAAAGGgataaagtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64906 lncRNA downstream 112647 13022024 ~ 13023104 (-) True G51875
TU64876 lncRNA downstream 211095 12923204 ~ 12924656 (-) True G51851
TU64825 lncRNA downstream 214960 12920545 ~ 12920791 (-) True G51811
TU64823 lncRNA downstream 227418 12907321 ~ 12908333 (-) True G51809
TU64717 lncRNA downstream 475634 12658484 ~ 12660117 (-) False G51724
TU64997 lncRNA upstream 31278 13169430 ~ 13213278 (-) True G51946
TU64989 lncRNA upstream 43763 13181915 ~ 13184356 (-) True AMCG00008844
TU65002 lncRNA upstream 71399 13209551 ~ 13211199 (-) True G51950
TU64999 lncRNA upstream 76120 13214272 ~ 13215995 (-) True G51947
TU65000 lncRNA upstream 115701 13253853 ~ 13257619 (-) True G51948
AMCG00008845 mRNA downstream 38361 13093007 ~ 13097390 (-) False AMCG00008845
AMCG00008839 mRNA downstream 89164 13030570 ~ 13046587 (-) True AMCG00008839
AMCG00008834 mRNA downstream 166214 12966348 ~ 12969537 (-) True AMCG00008834
AMCG00008833 mRNA downstream 193515 12926593 ~ 12942236 (-) True AMCG00008833
AMCG00008832 mRNA downstream 217955 12913536 ~ 12917796 (-) True AMCG00008832
AMCG00008846 mRNA upstream 17345 13155497 ~ 13158303 (-) True AMCG00008846
AMCG00008843 mRNA upstream 36041 13174193 ~ 13180841 (-) True AMCG00008843
AMCG00008850 mRNA upstream 47287 13185439 ~ 13203264 (-) True AMCG00008850
AMCG00008848 mRNA upstream 68737 13206889 ~ 13208547 (-) True AMCG00008848
AMCG00008852 mRNA upstream 81772 13219924 ~ 13224794 (-) True AMCG00008852
TU64926 other downstream 37817 13090537 ~ 13097934 (-) True AMCG00008845
TU64897 other downstream 133863 13000826 ~ 13001888 (-) True G51867
TU64813 other downstream 238617 12895335 ~ 12897134 (-) True G51799
TU64811 other downstream 244154 12890811 ~ 12891597 (-) True G51797
TU64350 other downstream 1809392 11320810 ~ 11326359 (-) False AMCG00008777
TU65001 other upstream 119554 13257706 ~ 13261822 (-) True AMCG00008853
TU65036 other upstream 169270 13307422 ~ 13309425 (-) True G51974
TU65044 other upstream 182122 13320274 ~ 13325227 (-) False AMCG00008860
TU65198 other upstream 547183 13685335 ~ 13686737 (-) True G52099
TU65308 other upstream 800299 13938451 ~ 13949091 (-) False G52187

Expression Profile