RNA id: TU64989


Basic Information

Item Value
RNA id TU64989
length 1389
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id AMCG00008844
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13135732 ~ 13184356 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTTCAGAGGCCAGTTCAAGGCACACTTCTCCCAGCAGATGCCTGACGCCATGCCCCTGCCACTGAGGACGGCCCTCAGTGGTCCCTAGTGCCCTGGGCTGGCATTCAAAAGAGGGGAGGGACTGTGGAGAGTTGGGGGTGGTGCTGGTTTTAGCTGTCAGcccaggagcaggagcaggactGGGAGGTGAGCAGGGCACGGAGGGGGAGAGTTCTGTGATGAGTGCCTGGAGTCGGCGGTGCACATCATTAGCGCAGTGTGCCATGTCTGCCAGGACGTGTTTGGGAAGGTGTAACCAGCCCCCTAGAAGGATGAGGTATATCAGATCACCTACCAGCCTCCCCAGATTCCCCCACTGTGGCTTGATCCTTCAGGATCGACTACGAGATTCCCAGTGGGATACAggcagtgagagtgtgtgtcagtgtttcttGAAGCAGTGTGTTTGCTGacatgcattttgtgtgtgtgtgtgtgaccatgTTTTTGTTGCACTGTATAAGACACACTTATATTCCCGCTGATTAAGAATGAATCACTGTCAATTACAACCccagtgtgagtgagtgtgagtgttgGTGGTGGgggtatattacattttaaggattcttttaaatgtataattagctacaactattattattattattattattattattattattattattattattattattattaatactaatattaatctGTTGTCGTCTGACATTTTGTAATGTGCTAACTTACCAGAAAAGGGCACTCtgccattatatatatatatttacatgtatgtgtCTCTCTTATACTGAATTGTATTTTCCCATTACCCTGCTCCTCTGCCCCACCCTGCTGACCAGTGTATTAATGGGGAAGGCCACTACAGCCGCACTGACAGTAGAGTCGGTTATGCTCTGTAGCAGCAGGGAAGACAGTGTTAATGTCACGGTGTTCGAGTCCAGTAGGATTCCAGTTTGTGTTTCCTGAAGTTGGGTTTAAGGGTTAGCGGGCGATGTTGATAttttatgttgtatgttttcctgATTGTAGTAATACTATATCCGGGTGACAGGGTGTCTTTAAGAGAAGAATTACTGGAAGCATTAAGGAGTTTACTACTGTGAGACTGAGAGCTAAAGctgtaattttgtattgaatagAAGTAACTAAAAAGAAGTATATCTCTGGTTCATAATTCATGACACTAATGAATGTAGGCATGTACAATCACTCTGTATCGAACCCCCcacctgtactgcagctgccaATAAACACTGTCTCTCTGCACCGCACTGCCCTGTCTCTGTGGTCGCTCATTTCTTGTCTGTGGGTCTGAGCACAACCACAGCCCCTACTGACACAGGGAGAGGCGAGATGCACTGTCCTCCCACTGCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64988 lncRNA downstream 45606 13135732 ~ 13136309 (-) False AMCG00008844
TU64906 lncRNA downstream 158811 13022024 ~ 13023104 (-) True G51875
TU64876 lncRNA downstream 257259 12923204 ~ 12924656 (-) True G51851
TU64825 lncRNA downstream 261124 12920545 ~ 12920791 (-) True G51811
TU64823 lncRNA downstream 273582 12907321 ~ 12908333 (-) True G51809
TU65002 lncRNA upstream 25195 13209551 ~ 13211199 (-) True G51950
TU64999 lncRNA upstream 29916 13214272 ~ 13215995 (-) True G51947
TU65000 lncRNA upstream 69497 13253853 ~ 13257619 (-) True G51948
TU65023 lncRNA upstream 114982 13299338 ~ 13300283 (-) True G51965
TU65035 lncRNA upstream 123066 13307422 ~ 13309425 (-) False G51974
AMCG00008843 mRNA downstream 1074 13174193 ~ 13180841 (-) True AMCG00008843
AMCG00008846 mRNA downstream 23612 13155497 ~ 13158303 (-) True AMCG00008846
AMCG00008844 mRNA downstream 43763 13135751 ~ 13138152 (-) False AMCG00008844
AMCG00008845 mRNA downstream 84525 13093007 ~ 13097390 (-) False AMCG00008845
AMCG00008839 mRNA downstream 135328 13030570 ~ 13046587 (-) True AMCG00008839
AMCG00008850 mRNA upstream 1083 13185439 ~ 13203264 (-) True AMCG00008850
AMCG00008848 mRNA upstream 22533 13206889 ~ 13208547 (-) True AMCG00008848
AMCG00008852 mRNA upstream 35568 13219924 ~ 13224794 (-) True AMCG00008852
AMCG00008851 mRNA upstream 43265 13227621 ~ 13246570 (-) True AMCG00008851
AMCG00008853 mRNA upstream 73342 13257698 ~ 13259058 (-) False AMCG00008853
TU64926 other downstream 83981 13090537 ~ 13097934 (-) True AMCG00008845
TU64897 other downstream 180027 13000826 ~ 13001888 (-) True G51867
TU64813 other downstream 284781 12895335 ~ 12897134 (-) True G51799
TU64811 other downstream 290318 12890811 ~ 12891597 (-) True G51797
TU64350 other downstream 1855556 11320810 ~ 11326359 (-) False AMCG00008777
TU65001 other upstream 73350 13257706 ~ 13261822 (-) True AMCG00008853
TU65036 other upstream 123066 13307422 ~ 13309425 (-) True G51974
TU65044 other upstream 135918 13320274 ~ 13325227 (-) False AMCG00008860
TU65198 other upstream 500979 13685335 ~ 13686737 (-) True G52099
TU65308 other upstream 754095 13938451 ~ 13949091 (-) False G52187

Expression Profile