RNA id: TU64990


Basic Information

Item Value
RNA id TU64990
length 716
lncRNA type read_through
GC content 0.57
exon number 3
gene id AMCG00008844
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13135732 ~ 13184356 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTTCAGAGGCCAGTTCAAGGCACACTTCTCCCAGCAGATGCCTGACGCCATGCCCCTGCCACTGAGGACGGCCCTCAGTGGTCCCTAGTGCCCTGGGCTGGCATTCAAAAGAGGGGAGGGACTGTGGAGAGTTGGGGGTGGTGCTGGTTTTAGCTGTCAGcccaggagcaggagcaggactGGGAGGTGAGCAGGGCACGGAGGGGGAGAGTTCTGTGATGAGTGCCTGGAGTCGGCGGTGCACATCATTAGCGCAGTGTGCCATGTCTGCCAGGACGTGTTTGGGAAGGTGTAACCAGCCCCCTAGAAGGATGAGGTATATCAGATCACCTACCAGCCTCCCCAGATTCCCCCACTGTGGCTTGATCCTTCAGGATCGACTACGAGATTCCCAGTGGGATACAggcaGACAAGCACCCCAAGCCAGGCAGACGTTTCATTGGAACCTCGAGGACGGCCTACCTGCCTGACAGCCCCGAGGGCAACGAGGTGCTGGGGCTGCTCCAGAAAGCCTTCGACCAGAATCTGATCTTCACTGTGGGCACCTCCAGGACCATCGGGTCCGAGGACACTGTCACCTGGAACGACATCCATCACAAAACTAATATGCACGGTGGACCTCAGAGGTTCGGCTATCCTGACCCTGACTACCTGAAGAGGGTGAAGGAGGAGCTGAAAGCCAAAGGgataaagtgaagaaaaagagacagagtGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64906 lncRNA downstream 112628 13022024 ~ 13023104 (-) True G51875
TU64876 lncRNA downstream 211076 12923204 ~ 12924656 (-) True G51851
TU64825 lncRNA downstream 214941 12920545 ~ 12920791 (-) True G51811
TU64823 lncRNA downstream 227399 12907321 ~ 12908333 (-) True G51809
TU64717 lncRNA downstream 475615 12658484 ~ 12660117 (-) False G51724
TU65002 lncRNA upstream 25195 13209551 ~ 13211199 (-) True G51950
TU64999 lncRNA upstream 29916 13214272 ~ 13215995 (-) True G51947
TU65000 lncRNA upstream 69497 13253853 ~ 13257619 (-) True G51948
TU65023 lncRNA upstream 114982 13299338 ~ 13300283 (-) True G51965
TU65035 lncRNA upstream 123066 13307422 ~ 13309425 (-) False G51974
AMCG00008845 mRNA downstream 38342 13093007 ~ 13097390 (-) False AMCG00008845
AMCG00008839 mRNA downstream 89145 13030570 ~ 13046587 (-) True AMCG00008839
AMCG00008834 mRNA downstream 166195 12966348 ~ 12969537 (-) True AMCG00008834
AMCG00008833 mRNA downstream 193496 12926593 ~ 12942236 (-) True AMCG00008833
AMCG00008832 mRNA downstream 217936 12913536 ~ 12917796 (-) True AMCG00008832
AMCG00008850 mRNA upstream 1083 13185439 ~ 13203264 (-) True AMCG00008850
AMCG00008848 mRNA upstream 22533 13206889 ~ 13208547 (-) True AMCG00008848
AMCG00008852 mRNA upstream 35568 13219924 ~ 13224794 (-) True AMCG00008852
AMCG00008851 mRNA upstream 43265 13227621 ~ 13246570 (-) True AMCG00008851
AMCG00008853 mRNA upstream 73342 13257698 ~ 13259058 (-) False AMCG00008853
TU64926 other downstream 37798 13090537 ~ 13097934 (-) True AMCG00008845
TU64897 other downstream 133844 13000826 ~ 13001888 (-) True G51867
TU64813 other downstream 238598 12895335 ~ 12897134 (-) True G51799
TU64811 other downstream 244135 12890811 ~ 12891597 (-) True G51797
TU64350 other downstream 1809373 11320810 ~ 11326359 (-) False AMCG00008777
TU65001 other upstream 73350 13257706 ~ 13261822 (-) True AMCG00008853
TU65036 other upstream 123066 13307422 ~ 13309425 (-) True G51974
TU65044 other upstream 135918 13320274 ~ 13325227 (-) False AMCG00008860
TU65198 other upstream 500979 13685335 ~ 13686737 (-) True G52099
TU65308 other upstream 754095 13938451 ~ 13949091 (-) False G52187

Expression Profile