RNA id: TU64926


Basic Information

Item Value
RNA id TU64926
length 2889
RNA type TUCP
GC content 0.46
exon number 4
gene id AMCG00008845
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13090537 ~ 13097934 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGATTGGACGAGACGGCACCGGCACGCAAACAGACCTGCCGGTCACTCTACTGCCCTACACCGGGTTTGTGGCTTTGCATTGCTGTACGGACAAGGATAAGTGCACAACCCAACTCTTCCAGCGGCGATGTCGTCACCAAACAACTGGGACGCTGACAGTGAAGGCCGCGCTGCCAAGCTGCTGCGGAAATCCAGAGACGCCCCCTTCGTCCCGATTGGCATGGCAGGCTTCGTGGGGTTGGTGGGGTTCGGGCTGTGGCGGCTGCGCTCGCGGGGGGCAGTGAAGATGTCAGTGCACCTGATCCACACGAGGGTGATGGCCCAGGGCTTTGTGGTGGGAGCCATGACGCTGGgTGTGATCTACTCCATGTACAAACAATACCTGGTGCCTGAAGACCCCAGCAGACCCAGCAAGTGACTTTCCCAGACTCCCAGATGCCCACCTGAGCACAGCACACCGCTGACCTCGGACCTGATCCCTGCTCTGATGGCCCGGCTGACTCTCAGCCCTGTCACTCCTGCGGTAACCATCGGCCCAGACTGCACCAGTCTCGTCTCCCGCTGCGCCTGTCTGTTTGGCTGGCGCTGTCCACTGCAATCCACTGAGGGAGAAGAACTAGGTTCGCAGACAagtatttatcaatttatttatttttgtgtgtacgACTGAAGAAGAGCCGCTGCAGGAATGTTAGATGGGTTACACataggagagggagacagacgGAGAGCGGCAGAGAGTGTCACACAGTCGATATATCAGTGTATCGGACAGTCAGCATATTAGTGTATCTCTGAATCATATATTTCAAACAACATCTGGCAGCTTTGAAAAACTGCACTGGCTCAAACAGATGTAATCAGGAGGGCGATTACATCTGTTTGAGCCACTGGGCCTGTGTTCACTGCACACCTGTAAACACAGAGGAGCTGACTTCCATCTGTTGTTTCTCTTTAGAGGGAGGGGAAAAGACATGtcagatctctctctccttttatatttcttaaataaaagtattttacggGGATTTCCAGGTTTGgcatcatgttttttctttctgttttacaaaatttaaaaaagctcAGAAGATTGGCACAGCCAGGGCTCGTCGCCACAGTTAGCTTTGGTTGGTCTGGGTTTCAGCTGTTCTGTAATACCGTCCAACTCAATACCACACAGTACAGTCCTGTCCTTTTCAATGTATTACAGCACAAATTTTGGACAAACCACTACTGTAAAGGCTCCGCGAGTCCTGGCCCTTCAGCTGCAGGTGCGGTTTCTCTTATGTCATTCTCttgactttaattaattaaccaagTCAGTTAATTGGCTTAAATGGGTCagaattattaataacattaattaatatggccaaaaaaaacacttcatttataatttgtaaaagagaaaattcaattttattttttaacacattttcaggtCAGGTTGTTGTTAAAAACATACTAAAATCCTTCCAATTCCGATACAGAATTAGGAAAGGAGTCATTTTCTCCCAAGATGCACTGTCAGTTTGGTCAGAGAcctgttttgctgttttgcagTGCTGTATTGAAGGAAAGACCATTATGGAGAGGGGGTGGTTAGTAATGTAGCTCTGAGACCTACACGTATCTGGCTGGTGAACTACCCCCCCTTCCCAGTATAAGAAATTGAATAGCCCACTTTCCCTTGAGGGGAAGGTCAAAGGTTACTGACAATTTATCTTGGGATTGGTAGTACTACTTGTTTTATAAGTGCTAACCAATGCAacactttttaataaattgatttGACACACAATAAAAAGGTGCACAGTGTACAAACATCTGTACCACATTCCCCACGATGCTGGTGTCCGATGGCACTGGTCGATGTTTACTACGTtgggtaaacaaaaaaaatgtttccattgTTAGAAAAACTATCGCTTTTAAAAAAAGCAGTTGACCGTAGCACTGCAGAGTGCTCCGGCTCGTACTGAACTGAGTTACTGCAGCTTTTTGGCCACCTAGCGGCAATTACTCAATTCAAATTACTAacagcatttgtgtgtgtgtctgtgtcagtatAAGCATCAGTCTGTGAttggtgtcagtgtgttgtctgtaatcctgtgtttaaaaaaaaaagtgtaaaaacaaaaaattaataaaattcaaCGTTACAAATAAGGCCCCATGTGCTGTAACTCTTCACAGATAAGCCATCTCTAATAATACACATTGTTACAatctctaataataataataaaatagtaggAATGTTAGATttcagtggggggggggggtcttgtCTTCATTCTTCTTCAGGGTCTAAACTGATTAGACTAGTTATCAGTCAACCCCCACCTGTACTATTTCAGGTCTAAATCGGTCACCCCCCTCCTGCTCTCTGCACCCAGACGGACACTTGGGTGTGGATATGCAAGGCTCTGTAGAACTCTACAGCCACATGTTCAACTGTAATAATACTCATATAATTTAGGGTAGGCCAAAAACACTTGAGAGTGCAGTGGAGTGGTGTCCGCTCACAGGAAGGGGGTGCTCGGGTCACTCCTGGGCCACATGCGTTTCTGATCCCCTCCATCAACAGATCGAGTGAGTTGGCCGATTGTCAATTCAGGCTCTGATGCCCAGCAGGCCCCCTCTCCTTTGCTATCTTTCCCCAGGCGTCGCTTCATCCATCTCGTTCAGGAGGTAGAGGTCAGAGTGAGGCATCAGCCGGAActgagtgggggaaaaagagaatTGGGcaggagggtgagagagagatagggatggagggatgggggtgagaaagagagagagcaagatagtcagatggagaaagagagagggtaAAACGGTTACTCACAGGTCTGACAGGGAGGTCACACATGGACAGCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64906 lncRNA downstream 67433 13022024 ~ 13023104 (-) True G51875
TU64876 lncRNA downstream 165881 12923204 ~ 12924656 (-) True G51851
TU64825 lncRNA downstream 169746 12920545 ~ 12920791 (-) True G51811
TU64823 lncRNA downstream 182204 12907321 ~ 12908333 (-) True G51809
TU64716 lncRNA downstream 430420 12657226 ~ 12660117 (-) True G51724
TU64988 lncRNA upstream 37798 13135732 ~ 13136309 (-) False AMCG00008844
TU64990 lncRNA upstream 37798 13135732 ~ 13184356 (-) False AMCG00008844
TU64997 lncRNA upstream 71496 13169430 ~ 13213278 (-) True G51946
TU64989 lncRNA upstream 83981 13181915 ~ 13184356 (-) True AMCG00008844
TU65002 lncRNA upstream 111617 13209551 ~ 13211199 (-) True G51950
AMCG00008839 mRNA downstream 43950 13030570 ~ 13046587 (-) True AMCG00008839
AMCG00008834 mRNA downstream 121000 12966348 ~ 12969537 (-) True AMCG00008834
AMCG00008833 mRNA downstream 148301 12926593 ~ 12942236 (-) True AMCG00008833
AMCG00008832 mRNA downstream 172741 12913536 ~ 12917796 (-) True AMCG00008832
AMCG00008826 mRNA downstream 205869 12863623 ~ 12884668 (-) True AMCG00008826
AMCG00008844 mRNA upstream 37817 13135751 ~ 13138152 (-) False AMCG00008844
AMCG00008846 mRNA upstream 57563 13155497 ~ 13158303 (-) True AMCG00008846
AMCG00008843 mRNA upstream 76259 13174193 ~ 13180841 (-) True AMCG00008843
AMCG00008850 mRNA upstream 87505 13185439 ~ 13203264 (-) True AMCG00008850
AMCG00008848 mRNA upstream 108955 13206889 ~ 13208547 (-) True AMCG00008848
TU64897 other downstream 88649 13000826 ~ 13001888 (-) True G51867
TU64813 other downstream 193403 12895335 ~ 12897134 (-) True G51799
TU64811 other downstream 198940 12890811 ~ 12891597 (-) True G51797
TU64350 other downstream 1764178 11320810 ~ 11326359 (-) False AMCG00008777
TU64340 other downstream 1794787 11235642 ~ 11295750 (-) False AMCG00008777
TU65001 other upstream 159772 13257706 ~ 13261822 (-) True AMCG00008853
TU65036 other upstream 209488 13307422 ~ 13309425 (-) True G51974
TU65044 other upstream 222340 13320274 ~ 13325227 (-) False AMCG00008860
TU65198 other upstream 587401 13685335 ~ 13686737 (-) True G52099
TU65308 other upstream 840517 13938451 ~ 13949091 (-) False G52187

Expression Profile