RNA id: AMCG00008850


Basic Information

Item Value
RNA id AMCG00008850
length 5046
RNA type mRNA
GC content 0.52
exon number 28
gene id AMCG00008850
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13185439 ~ 13203264 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttattttggtcgcgatgatctctctctctctctctctctctctctctctctctctctctctgatgcaCTGCAGTGCTGAAGGGTGTGTTCAGACGAGCTAGCACAAGTACAGTCACTGCGCTGCTTTACAACTTGCAGCTCCGTTTTCCtgcgttttttcttttttctgtaagGACCCAAACAGAGAGGCAGCACAACACATGTCAGAGGAACAGGAATATAAATAGTTCTTATTGTTTAACTgtaattcttgttttttgttgggTGCAGAAACGGTGCAAGTcggttgattttattttggacGTGACAGTCTGCTTTGACCGTGTATTGGAGCTACACCCCAGTCAACGTTTGGctgatcatttaatttaatgtaatgtacatattatatatgtattaatcacTTAACAGCGACTTATTATTTTTAGCACGCATTTTGAGCTGCCACaagttgattttctttttaatgttattattttcaccaACCTCCATGTGATTCTCCACTTACTGGACCGCAGCGTTAAAAGTACATCCAAGTCCAGTCGGTATCGGTAGCGATGCGGAACGCCGAGGGAGCGCCGGGGCCGACCGGGGGGGAAGCACCGAACCCGGAGGAGACCTACGGTGCCGACCCGGCTCTGGACCAGCCCCCGGGAGTCAATGCCGTCTCAGTGCTGTTGTCCTTCGGGAAGTGCCTGGGCGCCCTATTGCCAGTGTACTTGGCCGGGTACTTTGGGTTCAGCATCAGCCTGGTGGTGTTCGGGCTGATGGTGTACATGGGCTGGAAGTGCACCCGGGAGGGCAAGGAGACGCGCCTCAGGGCCGCCCTACACCAACtggagcaggagcaggaccTCACCGGCACCCGCATCTTCCGGAGCAAGAGAGACCTCCCGACTTGGgtgAATTTCCCTGACGTTGAGAAAGTGGAATGGCTGAACAAGGTGCTGCAGCAGGCCTGGCCCTTCCTGGGGCAGTACACGGAGAAGCTGCTGCTGGAAACTGTGGCCCCCTCCCTGCGCGCATCCAGCCCCCACCTGCAGACTCTGAGCTTCACTCGCATCAGCCTGGGGGACAAGGCTCTGAAGGTGGTAGGAGTGAAGGCCCACACTGAGATGGACAGAAGACAGGTGATGCTCGACCTGTACCTCAGctACGTGGGCGACGTGGAGATCAATGTGGAGATTAAGAAGTATTTCTGTAAGGCAGGAGTGAAGGGAATACAGttacATGGCATGCTGCGAGTGATCCTGGAGCCTCTGATTGGGGACGTGCCACTGGTGGGGGCTGTCACCATGTTCTTCATCCGCCGCCCTAGACTGGACATCAACTGGACCGGACTAACCAACCTGCTGGACATTCCTGGGCTAAATGTCATGTCGGACACCATGATCATGGACGCAATCTCCTCTTTCCTGGTTCTGCCCAACCGGCTCACAGTGCCCCTAATGGCTGACATGCACGTTGCACAGCTGCGCTCCCCACTGCCCAGGGGTATCGTGCGTATCCACCTGATTGAGGCCGATGCCCTGGCCCCCAAGGACACCTACATCAAAGGGGTGATGAAGGGGAAGTCTGACCCGTACGCCGTCCTGCGTGTCGGCACCCAGACGCACACCTCGCGCACCATCGACAACAACCTGAGCCCCCACTGGGGCGAGATGTACGAGGTGATTGTGCACGAGGTCCCAGGGCAGGAGCTGGAGCTTGAGGTGTTCGACAAAGACCCCGACCAGGACGACTTCATTGGCAGgATGAAGATGGACCTTGGGGCAGTGAAGAAGGCAGGAGTGCTGGATGAGtggttTACTCTGAAGGATGTCCAGTCTGGCCGTGTGCACCTGCGTCTGGAGTGGCTCTCCCTGCTGCCCAGTGCTGACCGTCTGGAGGAGgtgcttcagaaaaatcTCACAGTCTCCAGTAAGACCGCTGACCCCCCCTCGGCGGCCATCTTGGTGGTGTATCTGGACCGTGCGCAGGAGCTTCCTCTGAAGAAGGGAAATAAGGAGCCCAGCCCCATGGTGCAGCTGTCCGTGCAGGACACCACGCGGGAGAGCAAGacgtGTTACAGCTCCAGCAGCCCAGTGTGGGAGGAGGCTTTCAGCTTCTTCATCCAGGACCCCCGGAAACAGGACATCGACATCCAGgttAAGGATGATGACCGTGCGCTGACCCTGGGCAGCCTGTGTATCCCTCTGTCCCGCCTACTGATGGTCTCTGACCTCACCATGGACCAGTGGTTTCAGCTGGACAGCTCAGGGCCAGCCAGCCGCATCTACATCAAAGCCATACTGAGGattttgtggCTGAATGatgctgccccccccaccactcccGTCTCGCCCTCCCCCTCTGTGCTGGTGCCTGGGGAGGCTGGGGGCGATGAGGAGGAGGGTGTGAAGCCAGGGGTGTCCCCCGGGGGGGCTCAGAACCTGGTGGCCATGGACAACTTCATGATGGTCAAGGGCAAGAGTGACCCCTACGCCGTGATACGCACAGGGGGCGTGGCCTTCCGCAGCCGGGACCTGGACAAGGATGACTTCCTTGGCagGTTTAAAGTGAGCCTGAAGGACATCATCACCTCCCAGTACATCAACCAGTGGTACAGTCTAGCTGATGTGAAGTCCGGCCGTGTCCACCTTATCCTGGAGTGGCTGCCCAGAATGACCGAAACCGCCCGCCTGGACCAGGTGCTGCAGTACCAGTCCCAGGTGTCCTATGTGAACCAGGCAGTGCTGTCGTCCGCACTGCTGTTTGTGTGGGTGGAGCGCGCCCACAGCCTGCCGaTGAAGAAGAGTGGGAAGGAGCCTAAGGCAGGGGTGGAGCTAACGCTGAAAAACACTTCCCACAGGACCAAGgtgtgtgATCGGTCCAATGCCCCAGAGTGGGAGGAGGGTTTTTCCTTCCTGGTTCATGACCCCAGAGAGGAAATTCTGTTCGTGAAGatcTCCCACAGCTGGGGAATGCCACTGGGCTCGCTGGTTCTGCCCCTGCGGGAGGTGCTGACTGGGCCGGACCTGGTCCTGGACCGCTGGTTCAATCTGGATGGAGCCCAGTCTGACAGCCAGATACTGCTGAGAGTGGCGCTGAAGATCCTGGTTTCCCGGGAGACGGAGTGCGGCAGGGGGGAGGTCAGTGCCACCCCCCtcggagaggagggggagatgCAAGATCAGCCTGTCCCCACCCCGGAGCTCTCTGCAGCCAATCAGGATCTCCGACACAGAGGGGTGCCTGTGCAGGGggctGTTGACCATGACAACAGCTCAGTGGGGCAGGTGAAGCTGTCCCTGTCCTACTCCAGCGATGAGAACAGACTGGTCATTATCGTCTATGCCTGCAGgTACGATCTGAAAGAGGAGACGACCTAAATGACTGATAGTCACTATGACCCAGGCTCAGCCAGCGATGCCTTCAACCCTCCCCTCCACGCTCCCTCACTCCCACTCTGTGACACCAAgtgtttttacaatttaaacaattaatcttttaatttatcTGCTGTACTGTGAGATTTTGAGGGGGAAAAGAGGGGGGagagatattttttatttgatcacCAGCCAGGTAGATGCAGGGCAGATCCTTCCCTTGTAAACCCATCCTTGACTATGGCTGCAGAAAAGTCAAAATCCAATGAAATCAGTCTCTCAGAgacgcacacatacatacatacaaacatacaaacagacacacacacacacacacatacacagatagacagacagacacagatatGGATGGAGAGGGATAGGAAAGGAGAGAGgtagaggggaagagagagaaagagagggaggtaTGTAGGGAGCTGGGAATATAACAATCCCAGAGCTGGTATGGAGAATGGGTCCCCATCGCCGCCTTAAAGACACCACCCAGAGTGCTGTACACCGAAAACCAAAGTTATTTGAACTATTACATTGTTGCTGGTctatcattgtttttttaatatgtattttatgattcctattgttattgtcagtatttttctgttcttttcagCGGAGGTAAACaggagagtgtttgtgtgtttgtgtgcatgtctgtataTGCAGACGTGTCACGTGTGGCCTGATCAAAGCTGGAGTTCAGGAGTACAGGAGAGAAAGGGATGCTGGGAATATAGGAATGTGGGAATGAAGAAGGGGAATCCTGAATCTCGGTCTAATTTTTGTCACTCCtaaaaacacgcacacacataacTATTAGTacgtatacatgtatgtgtagaTATGGCTTCTGCCCAAACTAATTACTTTTGCATTGTGATCACGTCAGTTCAGGGCCAGAATTCAATACCTGTCCACAACAACACGGCGGCGACACAACTGTATACTGTAGCTCCAAAAGTGCCTCGCTGTCAcgatgtacacacacacacacatgcagtctgTATGTGCCCGTAAAGGGCTGGGGCAAAGGGCATCAGGGGCTCCAGCTGTGCAGAAAACATTATCAACTATCTCTGTTaagaaatgcaacacaaaacgCGATGGCCACAGTGCCCGGTCTGTGTGGCATGGCCTCACAGCAGGATAAAACACACTTAGCTTCTTAATCAGTGGgaaggaatatattttatttggaaagattgaaggattttttaaatatgcatttcatttacttCCATTATAattcctattattattgttattctgtgttCTTGCTTGATGCTTTGTAATGTGCTTTCTCACCATAAAAAGGCACTCTctacaatgtttaaaaacattgaacCCAGTATTAATGGGGAAGGCCACTACAGCCACACTGACAGTGGAGTCGGTTGTGCTCTGTAGCAGCAGGGAAGACAGCGTCTCAGTGTGTTAATGTCATGGTGTTCGAGTCCAGTAGGATTTTGTGCAATAGCTGGACAGAGTGGACAGAGCGGTGCTGACCGTGCCCAGTTTGTGTTTCCTGAAGTCAGGTTTAAGGGTCTGCAAGCAatgttgatattttattttgtaatttttcctGATAAATGTGTACAATCGCTCTGTATTCTGAACTCCCcacctgtactgcagctgccaATAAACACTGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64990 lncRNA downstream 1083 13135732 ~ 13184356 (-) False AMCG00008844
TU64989 lncRNA downstream 1083 13181915 ~ 13184356 (-) True AMCG00008844
TU64988 lncRNA downstream 49130 13135732 ~ 13136309 (-) False AMCG00008844
TU64906 lncRNA downstream 162335 13022024 ~ 13023104 (-) True G51875
TU64876 lncRNA downstream 260783 12923204 ~ 12924656 (-) True G51851
TU65002 lncRNA upstream 6287 13209551 ~ 13211199 (-) True G51950
TU64999 lncRNA upstream 11008 13214272 ~ 13215995 (-) True G51947
TU65000 lncRNA upstream 50589 13253853 ~ 13257619 (-) True G51948
TU65023 lncRNA upstream 96074 13299338 ~ 13300283 (-) True G51965
TU65035 lncRNA upstream 104158 13307422 ~ 13309425 (-) False G51974
AMCG00008843 mRNA downstream 4598 13174193 ~ 13180841 (-) True AMCG00008843
AMCG00008846 mRNA downstream 27136 13155497 ~ 13158303 (-) True AMCG00008846
AMCG00008844 mRNA downstream 47287 13135751 ~ 13138152 (-) False AMCG00008844
AMCG00008845 mRNA downstream 88049 13093007 ~ 13097390 (-) False AMCG00008845
AMCG00008839 mRNA downstream 138852 13030570 ~ 13046587 (-) True AMCG00008839
AMCG00008848 mRNA upstream 3625 13206889 ~ 13208547 (-) True AMCG00008848
AMCG00008852 mRNA upstream 16660 13219924 ~ 13224794 (-) True AMCG00008852
AMCG00008851 mRNA upstream 24357 13227621 ~ 13246570 (-) True AMCG00008851
AMCG00008853 mRNA upstream 54434 13257698 ~ 13259058 (-) False AMCG00008853
AMCG00008849 mRNA upstream 65270 13268534 ~ 13273981 (-) True AMCG00008849
TU64926 other downstream 87505 13090537 ~ 13097934 (-) True AMCG00008845
TU64897 other downstream 183551 13000826 ~ 13001888 (-) True G51867
TU64813 other downstream 288305 12895335 ~ 12897134 (-) True G51799
TU64811 other downstream 293842 12890811 ~ 12891597 (-) True G51797
TU64350 other downstream 1859080 11320810 ~ 11326359 (-) False AMCG00008777
TU65001 other upstream 54442 13257706 ~ 13261822 (-) True AMCG00008853
TU65036 other upstream 104158 13307422 ~ 13309425 (-) True G51974
TU65044 other upstream 117010 13320274 ~ 13325227 (-) False AMCG00008860
TU65198 other upstream 482071 13685335 ~ 13686737 (-) True G52099
TU65308 other upstream 735187 13938451 ~ 13949091 (-) False G52187

Expression Profile