RNA id: AMCG00008853


Basic Information

Item Value
RNA id AMCG00008853
length 477
RNA type mRNA
GC content 0.61
exon number 3
gene id AMCG00008853
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13257698 ~ 13261822 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGAACATTTTTGGGAACCTGCTGAAGAGCCTGATTGGGAAGAAGGAGATGCGCATCCTGATGGTGGGGCTGGATGCCGCCGGGAAAACAACCATCCTGTACAAACTGAAGCTGGGGGAGATCGTCACCACCATCCCCACGATTGGTGCGGCAGGGCAGGGGCATGGGCTGGGCAGGGGGAGGTCAAGGGAAGGGGTAGGGCAGGGCCTGATCTTCGTGGTGGACAGTAACGACCGCGAACGCGTGAATGAGGCAAGGGAGGAGCTGATGCGCATGCTGGCAGAGGACGAGCTGCGAGACGCCGTGCTGCTCgaCCTGCCGAATGCGATGAACGCAGCTGAGATCACAGACAAGCTGGGGCTGCACTCCCTGCGCCACCGGAACTGGTACATCCAGGCCACCTGCGCCACCAGTGGGGACGGGCTGTACGAGGGGCTGGACTGGCTGGCCAATCAGCTCAAGAACAAGAAATGA

Function

GO:

id name namespace
GO:0006661 phosphatidylinositol biosynthetic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65000 lncRNA downstream 79 13253853 ~ 13257619 (-) True G51948
TU64999 lncRNA downstream 41703 13214272 ~ 13215995 (-) True G51947
TU64997 lncRNA downstream 44420 13169430 ~ 13213278 (-) True G51946
TU65002 lncRNA downstream 46499 13209551 ~ 13211199 (-) True G51950
TU64990 lncRNA downstream 73342 13135732 ~ 13184356 (-) False AMCG00008844
TU65023 lncRNA upstream 40280 13299338 ~ 13300283 (-) True G51965
TU65035 lncRNA upstream 48364 13307422 ~ 13309425 (-) False G51974
TU65103 lncRNA upstream 114325 13373383 ~ 13455852 (-) True G52019
TU65126 lncRNA upstream 179030 13438088 ~ 13439626 (-) True G52041
TU65235 lncRNA upstream 512502 13771560 ~ 13776929 (-) True G52131
AMCG00008851 mRNA downstream 11128 13227621 ~ 13246570 (-) True AMCG00008851
AMCG00008852 mRNA downstream 32904 13219924 ~ 13224794 (-) True AMCG00008852
AMCG00008848 mRNA downstream 49151 13206889 ~ 13208547 (-) True AMCG00008848
AMCG00008850 mRNA downstream 54434 13185439 ~ 13203264 (-) True AMCG00008850
AMCG00008843 mRNA downstream 76857 13174193 ~ 13180841 (-) True AMCG00008843
AMCG00008849 mRNA upstream 9476 13268534 ~ 13273981 (-) True AMCG00008849
AMCG00008861 mRNA upstream 43654 13302712 ~ 13305069 (-) True AMCG00008861
AMCG00008860 mRNA upstream 57809 13316867 ~ 13322530 (-) True AMCG00008860
AMCG00008859 mRNA upstream 69911 13328969 ~ 13331002 (-) True AMCG00008859
AMCG00008864 mRNA upstream 180864 13439922 ~ 13456129 (-) True AMCG00008864
TU64926 other downstream 159764 13090537 ~ 13097934 (-) True AMCG00008845
TU64897 other downstream 255810 13000826 ~ 13001888 (-) True G51867
TU64813 other downstream 360564 12895335 ~ 12897134 (-) True G51799
TU64811 other downstream 366101 12890811 ~ 12891597 (-) True G51797
TU64350 other downstream 1931339 11320810 ~ 11326359 (-) False AMCG00008777
TU65036 other upstream 48364 13307422 ~ 13309425 (-) True G51974
TU65044 other upstream 61216 13320274 ~ 13325227 (-) False AMCG00008860
TU65198 other upstream 426277 13685335 ~ 13686737 (-) True G52099
TU65308 other upstream 679393 13938451 ~ 13949091 (-) False G52187
TU65310 other upstream 684940 13943998 ~ 13983893 (-) True G52187

Expression Profile