RNA id: AMCG00008854


Basic Information

Item Value
RNA id AMCG00008854
length 5096
RNA type mRNA
GC content 0.47
exon number 7
gene id AMCG00008854
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13368598 ~ 13377702 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCCGACAGTGTGTGTCGAGGGCGCCGCTGCCGTGAATAGgctgtttctgttttggttttgacGAGAGGAGAAGATTACAAGCTATTGGAAAAGTCCAGAGAAGTGGATATTAGACGTAAACAGACGAAGTGATTGACGAATCCGGCGGTCGAGACCGCGGGGTCTGCAGTTATCGACTCCAGTCGCGGGTGCCGGCCCTCAGTGGGAGCGCGAGGCCTGGCGCGCAGCTCGAGCCGCACTTGTTGAAAGTTTGTTGTTGTCACGTGACCCCAGGCAGGCGAATGCGGcgataaaaaaagtttttgtttcgcacaatttttaacatttttactttcattctttttattattatttattcatatcgCCATCAGTATTTTCTTGGGTTTTAAACATGCCTCAACCGAAACACAGAAAAATTGCCGTTTTAGGGTACCGATCCGTAGGCAAGTCTTCGCTCACTATCCAGTTTGTGGAAGGGCAGTTTGTGGACTCCTATGACCCCACCATTGAAAACACCTTTAATAAGATGGTGTCAGTGAATGGGCAGGACTTCAACCTGCAGCTCGTGGACACCGCAGGCCAGGATGAGTACTCCATCTTCCCCCAGTCCCACTCCATGGACATCCATGGCTATGTCCTGGTGTACTCGGTGACCTCCATGAAGAGtttTGAAGTGGTTCAGGTTCTCCATGATAAGCTGCTGGATATGGTTGGGAAAATACAGGTCCCAACTGTTCTTGTTGGGAACAAGAAAGATCTGCATATGGAGAGGTCAACGGCCGTGGAGGTATTCAAGAAGATCATCCTGGAGATGGAGAGGGCGGACGGCAACGCACCTGCAGAGGACAAGAAGTGCAGAGTGATGTAGAGACGCCACCTGGGACGCAGGGGCCAGAGCGGCACAGCCAGGccaacccccaccaccaccaccaccaccaccaccaccaccaccacctcctcctcctccttcaccaGCACACAGATGCCACGACTAGTTGAGCAATCACAGCATGCGGGGCCCACAGGCCCGGACAGCACAGACCTGGCTCTGGAGTGTTACAGCAGGGCTCCGTTAATCAGCCTGTCATGGTTCTGGacccaccccctccctgcccccaGCCACCCATCCACTTTAGAATTGAAGATTGGAGGTCCCAGGTTTAGAATGATGGAAATCCAGAGAATAAGGATGGTTAACGAACCAAACCACCATAACataaaaaacccaaacaaaacactgaggtgttaccaaaacaaaacaggttcTGCTTCTTCTAAATTCAGACTAAAAaatcagaatattttatttcctttacatttGTTCTAAACGTATTGAGTATAAGTCAGATTTACCCAGAGTGGCCCCTGTGTTCTTGATTTCTGTGGGGAAAAGGAAGGATTCAGACCAGTCCTAATCCAGACCTCTCCAcacccccctccaccacccGCAACCCACCACAGGTCAGACCGGAGTCACACAGTTACAGCAGCCACTGCTGATCTCTGCCAATCGGATCCCAACCTGCACCCAGCCAATTAAGGACCTTCACTGCAATTGAACTCCACCAATCCAAGCACTCTTACCACCCGTACAAGCCCGCCCACCCGCCACGCACCCCTTTATCTATCCTGATCCACTAGGCCTGGCTGAAGCTTGCCTGACGGCTTGAGCCTTTGTTGAAAATACGAGGAGACACAGTTTTGCTGTAATGGATGGAAGACAGCGTGCAGTGGGAGAAGGGGAAGAATTGGAGGCCTCACCTGACTGCTGCCTGAACTCCCATCCGATCCGGCTTCATTGGCGGCTTTTCCAGTTATTGTGCATTGGCTGTTGGTGTCAGCTGTGGGATACCGGGGGCTGGCTGTCAAATGCTGTGCTATGGTCCCGGGCAGTCACTGTACACAGTAGGAACGGCTCGGTTGAGGCTGTCTGCACCTGTGAAGTGATTGGATGAAAAATCTCAGCCTCAGTCGCAGATacaatgcttatttttttataaaggaaGTGTATACACTGTAAAATACAGCAAGGAACTCACTGGCagtatattttccattattttgttaCTGTAATAATTTGTCcctttttttatagaaaattaTAGATGGTTATATAAtttcctataaaaaaaaaaaaaaaaaaaaaatagtggaCCGTAACCTTTTTTTGGTAGTAAGCTGGCTGGATGAGgttgataatgatgattattattattttaagtaattatacTTTTGATAGTTGTATAGGCATCTCTGTctcttctttctcctcttcACTTCAATTTTTACTCCTTCAGGAAGATAAATAGAATTTGTGGGTAAAGTGGGGTTTCTGCTATtgtcacaaacaaacacacacacacacactcacttggGCACAccaacacactcacaaaaacaaagcctTTAAAACCGGTGCCTTGTCCTGACACCCTGGCTGTCAGTCTCTGCTGATCTAGAGAAACAGTGTCGCTGTTCCTCTGCTGagctccttttctttctcctgtcTTTCTTTCCATCGGTTGTTGTACTTAATTCCAAACGGGAGACATTTTCTTGTCGACCGTCCTGTGCCTTAGATTAACGGCATTCCTCTCCGTTCTGAAGTGGGGGGGGTGATTCTCTGCACTCGGAAGTGCAGGTTTGGGTATTCACCTCGACCTCGGGGGATTGTCGTCTCAGGGTTAACTGTTGTAATCTGGGAATATAGTTTGCCAAACTCCTGATACCCCTACCCTGTGGCAACTGCATCTAACTACACAGAAGAAGTTTTATTCCAGTGAGCACTGGaaattgtgtgcatgtgtgcatgctagtgtgtgtgtacatagaGATGGTGAACGAGTTGCCTGTGTTGGGGGTGTAGACAGTTCCACTATACAGCAGACCGTTGTCATCTGCCCAGAAAATAAGTTTATTCTATAGGGAAGTAGACAGTGCAGGATGCTGCCGGCCAGGGACAGTAAGTAAACCACAACAAATCAAGAACCTGAAACAAACCCTCCTCTGGGTTTCAACAGGCTGGATGTGTCAAGCTTTCATGCATCAAACATTAAACTCAATTCTCCTCTCTGGAGCTTTCAGAGAATTTTTACActtcagaataaatataatgtatgaaGAAACCCCAAATAGGCCTCACTatcaacccccaccccccaccactaCCACACTGGTGAAAGAGAGTAGGTAGAATCCCTGTAAGGTGGGGGGATTCTATACTTCTATTGACTGCAGTGTTGAGAGTGCAGCTCTGAGTAGTGTCCCCTGCAATCCCCCTGTGAAGAAAAGGCTCACAATATATAGTCTCCCAGTGTGTTTCAGGACCAGCTGACTGATTTCCTTCATGGGCAAGACTGGGGTGTTTTcctttgtaatattaatatatattgtgatgcgTTACTAGAAACTGCTTTACTTTGAAACAGAcctacaaataaacaaaaagaaggGCAATCGTTTGGCTCCCTGAGCGAATGGCTCCCTGGTGGCGGACGCAAGGGGAGGTGGAGTGTTGGATCACTCTGTTCTGTTAGGGTCGGGTATGTGTATATTAAGTAATTACACTGCTCCTAAACCGAGTACTCGGTCATGGCGGTTTATGGTTGCAGACTAAGcggttaatatatttttgggaAAAGTAAACCTTGTCATCcccttctctctgtttctctgtgtttgtctttcttttctgtcttcATAGATGGttgtaaatcaatacaaacatcATGAACACTAATCAGAATTCAGAATCACAGGTTCTTTTCTTTGGTTTGGATGTGAAGATGTTGACAAGTCCATTATTattctcagtttatttttttctctggtATTTATGTTTTGGCCACAGTTTACTGTGCCCTGTGCCTTACTCCCTATCCTCCTTTCTCACTCTCTGTCAGATTGCATATTCATAACACATGAACTGACATGCTAAAGTTATCACCCCCACCTCCCAGATGAAACCACTTAGACTTGATGGACAGTGCCCCCTGGTGATGTAGCTCAGCCCAGTGTACAGTGGTTCAGCAGAGGGGTTTGGTAGCAGGAGGttccgggtgtgtgtgtccccccGGTCGTTTGAGTGAGTGTCCTGAACCATCCTGTGCTCTGTAATTCAAACAGGAAGTGCAGGTCTCTTGACTCTGCAGGCAGTGGCGGTATAGGACAGTATAGTTCAGCTGGTGATAATAGCCCAGCTCCACCTCTAGGCTCAGTATGGTGTTCTGAGTAAAAGGGGATTGTTGaatgacattattattgttattattaataataatattattattattattattattattattccaatcTGGGAGCCCTTGGCTGCCCTAAGTAGTGTGTGAGTTTAAAGACCTCTATATAAGCAAGTGCCAGGTGGAGCGGTCACCCTCCCTGCGACTGAGTGTGTATTGTCACAGGGGGGTGGTTGGGAGAGCAACTGTCGATCAATGGGAAAGGGCTCCCCAGGCCTGGGTCCCTGGCTGCTTTCCTTGCTCCCGCTCCCCCTCCGAACCCTGGAGCATGCCCACCCTTGAGTGTAGGGACTCCAGTCTGTGTCTCCAGATCTTTGTCTGGAATGCATCATGGGTAAATTTGCTGTTGAAACAACTTTCTAAGGGCTAggaatgtcattttaaatagatgAAGCACCTGGGGAGCGATCTTGGAGCGAGGTCCTGAGGACACAGGTGTACCCCCCCAAAGGGCTGGACCTGTTCACCCTGCCGCCCAGTGTGGCATCGTTCTCTCTGGGCGCTGACTGGGGAGCCCCTGTAGGGTAGcgtgtgtgattatttttttgtttctctttttttttttggtggtgttgCTGCAGTTTGTTGGTTTTTCTCAGAATTGCTGTCTGCTTCAGGGCACCAGCTTAGTGTTTTGTCAGTGCAGCCCTGACTCCTCTCTCCTGGCAAACTTGCCACtctcacagtcacacagacagacagacagacactcactcatacagacactgactcacacacacaggcatacactcacacacacctctcttGCAGTCGCACTCAGAACAGAGACTTGCTGTAAACagtttttgtatataaataaattagttagtCCTTTGTA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07208 RHEB; Ras homolog enriched in brain

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65030 lncRNA upstream 53546 13313590 ~ 13315052 (+) True G51970
TU65029 lncRNA upstream 56140 13311329 ~ 13312458 (+) True G51969
TU65028 lncRNA upstream 57825 13309616 ~ 13310773 (+) True G51968
TU64982 lncRNA upstream 110958 13253814 ~ 13257640 (+) True G51939
TU64940 lncRNA upstream 181459 13140563 ~ 13187139 (+) True G51904
TU65130 lncRNA downstream 99048 13476750 ~ 13476978 (+) True G52044
TU65199 lncRNA downstream 309137 13686839 ~ 13687780 (+) True G52100
TU65363 lncRNA downstream 750785 14128487 ~ 14128691 (+) True G52234
TU65529 lncRNA downstream 1164937 14542639 ~ 14545754 (+) True G52361
TU65532 lncRNA downstream 1175194 14552896 ~ 14553241 (+) True G52364
AMCG00008855 mRNA upstream 2493 13355405 ~ 13366105 (+) True AMCG00008855
AMCG00008857 mRNA upstream 21236 13333765 ~ 13347362 (+) True AMCG00008857
AMCG00008856 mRNA upstream 59354 13306495 ~ 13309244 (+) True AMCG00008856
AMCG00008858 mRNA upstream 65970 13299306 ~ 13302628 (+) True AMCG00008858
AMCG00008847 mRNA upstream 79673 13281274 ~ 13288925 (+) True AMCG00008847
AMCG00008862 mRNA downstream 9705 13387407 ~ 13431241 (+) True AMCG00008862
AMCG00008863 mRNA downstream 56755 13434457 ~ 13439625 (+) True AMCG00008863
AMCG00008867 mRNA downstream 139961 13517663 ~ 13534601 (+) True AMCG00008867
AMCG00008868 mRNA downstream 194824 13572526 ~ 13582004 (+) True AMCG00008868
AMCG00008871 mRNA downstream 239349 13617051 ~ 13628477 (+) True AMCG00008871
TU65027 other upstream 59168 13306732 ~ 13309430 (+) False AMCG00008856
TU64983 other upstream 110958 13254178 ~ 13257640 (+) False G51939
TU64968 other upstream 143652 13222320 ~ 13224946 (+) True G51928
TU64845 other upstream 376106 12980804 ~ 12992492 (+) True AMCG00008837
TU64826 other upstream 441804 12925238 ~ 12926794 (+) True G51812
TU65505 other downstream 1104219 14481921 ~ 14483255 (+) True G52349
TU65523 other downstream 1150116 14527818 ~ 14540958 (+) False AMCG00008910
TU65601 other downstream 1414467 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other downstream 1414642 14792344 ~ 14794972 (+) False AMCG00008920
TU65619 other downstream 1429595 14807297 ~ 14809286 (+) False AMCG00008919

Expression Profile