RNA id: AMCG00008858


Basic Information

Item Value
RNA id AMCG00008858
length 659
RNA type mRNA
GC content 0.58
exon number 6
gene id AMCG00008858
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13299306 ~ 13302628 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGCGCTTCCCGTTGCCCTCTATCGGCCAGACGGTGAACTGCAGCCCGGCTCCCAGCGTGGCCAGACCGGGAGGGGCTTGTGAGATGCTGGCGGAATGTGGAGGCGGGgaatccagtccagtccagGTAAAACCGGAGCAATGCACAGAGACGGCGGAGACTGGGGACACGCTGCATATACACTACACCGGGAAACTGATGGATGGTCAGGTGATTGACACCTCACACTCCCGGGATCCACTGGTGGTGGAGCTGGGCAAGAAGACAGTCATCCCAGGGCTGGAGCAGAGCTTGCTGGGAGTCTGTGCAGGgCAGAAGATTAAGACCACCATTCCTTCTCATCTGGCCTACGGAAAACGAGGCTTCCCCCCAACCATCCCAGGGGATGCAGCGCTGCAGTTCGAGGTGGAGGTGGTGGCATTGGTGAGGCAGACGCCCTGGCAGCGGCTGGTGAGCGATGTGCTGCCCTTGCTGAGCTTGGCGCTGGTGCCCACCCTGCTGGGCCTGATCGGGCTCTACCTTTACAGCAAGGCCAAGGCCCAGGCGCCGGGCAGGAGGAAGAACAAGGACAAGAAGGGCAAGGCCAAGAAGAaatgacagcagcagcagcagcaaagataattataattgtaataatgatgatgataataataaac

Function

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K09576 FKBP11; FK506-binding protein 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64982 lncRNA upstream 41666 13253814 ~ 13257640 (+) True G51939
TU64940 lncRNA upstream 112167 13140563 ~ 13187139 (+) True G51904
TU64844 lncRNA upstream 318531 12978864 ~ 12980775 (+) True G51828
TU64828 lncRNA upstream 371461 12927618 ~ 12927845 (+) True G51814
TU64810 lncRNA upstream 402199 12896349 ~ 12897107 (+) True G51796
TU65028 lncRNA downstream 6988 13309616 ~ 13310773 (+) True G51968
TU65029 lncRNA downstream 8701 13311329 ~ 13312458 (+) True G51969
TU65030 lncRNA downstream 10962 13313590 ~ 13315052 (+) True G51970
TU65130 lncRNA downstream 174122 13476750 ~ 13476978 (+) True G52044
TU65199 lncRNA downstream 384211 13686839 ~ 13687780 (+) True G52100
AMCG00008847 mRNA upstream 10381 13281274 ~ 13288925 (+) True AMCG00008847
AMCG00008842 mRNA upstream 166631 13123231 ~ 13132675 (+) True AMCG00008842
AMCG00008841 mRNA upstream 182262 13105526 ~ 13117044 (+) True AMCG00008841
AMCG00008840 mRNA upstream 201391 13074080 ~ 13097915 (+) True AMCG00008840
AMCG00008835 mRNA upstream 234225 13063495 ~ 13065081 (+) True AMCG00008835
AMCG00008856 mRNA downstream 3867 13306495 ~ 13309244 (+) True AMCG00008856
AMCG00008857 mRNA downstream 31137 13333765 ~ 13347362 (+) True AMCG00008857
AMCG00008855 mRNA downstream 52777 13355405 ~ 13366105 (+) True AMCG00008855
AMCG00008854 mRNA downstream 65970 13368598 ~ 13377702 (+) True AMCG00008854
AMCG00008862 mRNA downstream 84779 13387407 ~ 13431241 (+) True AMCG00008862
TU64983 other upstream 41666 13254178 ~ 13257640 (+) False G51939
TU64968 other upstream 74360 13222320 ~ 13224946 (+) True G51928
TU64845 other upstream 306814 12980804 ~ 12992492 (+) True AMCG00008837
TU64826 other upstream 372512 12925238 ~ 12926794 (+) True G51812
TU64761 other upstream 453073 12842715 ~ 12846233 (+) True G51756
TU65027 other downstream 4104 13306732 ~ 13309430 (+) False AMCG00008856
TU65505 other downstream 1179293 14481921 ~ 14483255 (+) True G52349
TU65523 other downstream 1225190 14527818 ~ 14540958 (+) False AMCG00008910
TU65601 other downstream 1489541 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other downstream 1489716 14792344 ~ 14794972 (+) False AMCG00008920

Expression Profile