RNA id: TU65044


Basic Information

Item Value
RNA id TU65044
length 381
RNA type TUCP
GC content 0.62
exon number 4
gene id AMCG00008860
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13316867 ~ 13325227 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGAAGTTGTTTGGGGTTCCAGGTAAAAGCTACCGGAGATGCTGCCGTCGCCAGAGAAAACAAGCGGAAAGCCAGAGACATAAATCCGAGAATCGGGGCCGATCGCCTTTCGCGACAGCCAGCCTGTGTGAGGATGGATGCTGAAGACTGCAATGGCCGATCCTACGTGTCAGGCAGTGGAGACTCATCGCTAGAGCGGGAGTTCTCGGGGGGCCTGGGGGGGCCGACCGTGAGCACCCCCAACAGCCAGCACTCCTCCCCGAGCCGCTCCCTCAGCGctAACTCGATTAAGGTGGAGCTGTACAGCGATGAGGAGATGGGGCGTCTGCGGGGGGGTGacgagcgagagcgagagagggaggagggaggaccGGGAGGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65035 lncRNA downstream 10849 13307422 ~ 13309425 (-) False G51974
TU65023 lncRNA downstream 19991 13299338 ~ 13300283 (-) True G51965
TU65000 lncRNA downstream 62655 13253853 ~ 13257619 (-) True G51948
TU64999 lncRNA downstream 104279 13214272 ~ 13215995 (-) True G51947
TU65002 lncRNA downstream 109075 13209551 ~ 13211199 (-) True G51950
TU65103 lncRNA upstream 48156 13373383 ~ 13455852 (-) True G52019
TU65126 lncRNA upstream 112861 13438088 ~ 13439626 (-) True G52041
TU65235 lncRNA upstream 446333 13771560 ~ 13776929 (-) True G52131
TU65263 lncRNA upstream 497886 13823113 ~ 13830315 (-) True G52157
TU65338 lncRNA upstream 680500 14005727 ~ 14006439 (-) True G52214
AMCG00008861 mRNA downstream 15205 13302712 ~ 13305069 (-) True AMCG00008861
AMCG00008849 mRNA downstream 46293 13268534 ~ 13273981 (-) True AMCG00008849
AMCG00008853 mRNA downstream 61216 13257698 ~ 13259058 (-) False AMCG00008853
AMCG00008851 mRNA downstream 73704 13227621 ~ 13246570 (-) True AMCG00008851
AMCG00008852 mRNA downstream 95480 13219924 ~ 13224794 (-) True AMCG00008852
AMCG00008859 mRNA upstream 3742 13328969 ~ 13331002 (-) True AMCG00008859
AMCG00008864 mRNA upstream 114695 13439922 ~ 13456129 (-) True AMCG00008864
AMCG00008865 mRNA upstream 134334 13459561 ~ 13473216 (-) True AMCG00008865
AMCG00008866 mRNA upstream 155751 13480978 ~ 13487619 (-) True AMCG00008866
AMCG00008869 mRNA upstream 212766 13537993 ~ 13540286 (-) True AMCG00008869
TU65036 other downstream 10849 13307422 ~ 13309425 (-) True G51974
TU65001 other downstream 58452 13257706 ~ 13261822 (-) True AMCG00008853
TU64926 other downstream 222340 13090537 ~ 13097934 (-) True AMCG00008845
TU64897 other downstream 318386 13000826 ~ 13001888 (-) True G51867
TU64813 other downstream 423140 12895335 ~ 12897134 (-) True G51799
TU65198 other upstream 360108 13685335 ~ 13686737 (-) True G52099
TU65308 other upstream 613224 13938451 ~ 13949091 (-) False G52187
TU65310 other upstream 618771 13943998 ~ 13983893 (-) True G52187
TU65929 other upstream 2160155 15485382 ~ 15505517 (-) False AMCG00008951
TU66056 other upstream 2511762 15836989 ~ 15837801 (-) True G52782

Expression Profile