RNA id: AMCG00008863


Basic Information

Item Value
RNA id AMCG00008863
length 2329
RNA type mRNA
GC content 0.50
exon number 14
gene id AMCG00008863
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13434457 ~ 13439625 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTAGATCTGACGGACGCTCTTCCTGCGACGTCACTGGTCTCGCCGGAAACGGAACACCGAGAAGGGGGTGGCAACCAAGCAGTAAACCAAGACCCAAGCGGGGATTGCATTCAGAAAGCAGGAATAAAGGAAATCAGGAAAGCGGCGATAAACCGAGACCATCGAGCGGACTCTCCTAGCTGCAGGCAGCGAGCGGCGGATGGGATGGAGGGTGTCACGGCTGGACTCGAAGACTCAGAGGGCAGAATTGACCCCTCTGTGGATGACCCAGATCGTGATGTCTACGCTTGTTTCATGAAGTCTCACCGCTGTTATGACCTGGTGCCTACCAGCTCCAAACTGGTCGTCTTTGACACATCTTTGCAGgtGAAAAAGGCTTTTTTCGCTCTGGTGTCCAATGGCGTCCGAGCAGCCCCGCTCTGGGACAACAAGAAGCAATGCTTTGTGGGCATGCTGACCATTACAGACTTCATCAACATTCTCCATCGATACTACAAGTCCCCTCTGGTGCAGATATACGAGCTGGAGGAGCACAAGATCGAGACCTGGAGGGaggtgtACCTGCAGGGCTCCTTCAAGCCCCTCGTCAGCATCTCCCCCAATGCCAGcCTGTACGATGCCGTCTCCTCTCTGGTGAAGCATAAGATCCACCGCCTGCCGGTGATCGACCCGCTGACTGGCAACACACTCTACATCCTCACCCACAAGAGGATCCTCAAGTTCCTCAAGCTGTTTaTCTCAGAGATGGCGAGGCCCAAGTTCCTGCAGCGCACCCTCGAGGAGCTCTCAGTCGGGACGTTCGAGCACATCGCCGTGGTGCACCCGGCCACGCCCCTCTACACCGCGCTGGGCATCTTTGTGGAGCAGCGGGTCTCCGCCCTGCCCGTGGTCGACGACAAGGGGCGAGTCGTGGACATTTACTCCAAGTTTGATGTGATAAACCTGGCTGCAGAGAAGACGTACAACAACCTGGACGTGACGGCGCTGGTGCTCACAGTGGGAGgGACAAAAGATGACTGATGGCGGAGGGAcacaggagggagggagtgggagaCCGGGGTGCCAGGAATGACAATAGCAGGAGGGGTAGAGGTTAGACAGGCATTCGTCAAAGTCCCCCTTCACTTTGTCCCTGccctcccaacacacacacagcccccccaaCACTCCCTatctcaacccccccccccccggggaAGGTGGAAACCCACCACTCTGTGGGCTGCAAATACCACCCTCAAGGACTGTGACATTCAGAGCTGAGCCGGTCCGGTCCAGACCAAATCAATTCAGCATTTCATTTGGATTGATTGTTTGGGGGGGTAATCATGTGATTCCCTCTTTCGCTTTCACTCTTCATTTGTGCTATCCTGTCTGCTCGGTCAGGGGGCCTAGGACCTGGACTCTGTGCACTTCAGACAGCTGAACCGGCAGCACATCCCGCTGGGCACAAACCGACACTGCCCTCTGTGTCTGGCCTTATGGACCTATATGAACATAGATACTTAAGATGTTTTTCACAGATTGTAGCAATAGTCTTGAAAGAGGTAAAGTTGCACCCAGATTTACTTACCAAGATAATtataaatttatatattatatataatatctcaTTAGTTCTCTTGTCCTACTCCATTCCTTACTCTTAGATCATTATTTTTACTACCACTTTATCCTAATTTAAGTTCTATATCAGGTCTTTATGAGCctggttggtgtgtgtgtgtcttttgtacGTCTCTGCGTgccagtttgtgtgtgtgtgttcatgttgGGGACAGACAAATgcaagcaaacaagaaaaaacaagaaaagggaTCTTAATATTTTGGCCCAATACCTCCCAGCTGCTCTCAGCTCCTCTTTGGGCCCAGCAGCCAATTTGGAGCATCTGCTTCTCTTTCCCGCTGTCCTTGTTTCTGTACATCTTTCAGCCATACTGCACTTCCTTATTACGGcataatatgaattaaaataatcaaaaataaagtcCTTGTGTGGGGCTGGTCTCGTGAGGGCCTGGCTGCCCACTCACCCTGGGTTAATGTCCAGTGCAGGGTGCTTCACTGAGACCTAAACTATGACCCTGCAGACCGAGACGAGTGGGtgggtattttgttttaatttgatatgtGAAGCTGCCTCAAAGCAGGGAAGTGATGTGGTCACTTCACACAGTTATCAATTATAAATgctgttttactttaattagaCTTGATTTTTGAAGACATACaggtatatattatatacagttttgtttcttttctattCATGCTGTACATGTCATTTTTATCTTGAGCATGAGcaataaactgtatttatttta

Function

GO:

id name namespace
GO:0030554 adenyl nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65030 lncRNA upstream 119405 13313590 ~ 13315052 (+) True G51970
TU65029 lncRNA upstream 121999 13311329 ~ 13312458 (+) True G51969
TU65028 lncRNA upstream 123684 13309616 ~ 13310773 (+) True G51968
TU64982 lncRNA upstream 176817 13253814 ~ 13257640 (+) True G51939
TU64940 lncRNA upstream 247318 13140563 ~ 13187139 (+) True G51904
TU65130 lncRNA downstream 37125 13476750 ~ 13476978 (+) True G52044
TU65199 lncRNA downstream 247214 13686839 ~ 13687780 (+) True G52100
TU65363 lncRNA downstream 688862 14128487 ~ 14128691 (+) True G52234
TU65529 lncRNA downstream 1103014 14542639 ~ 14545754 (+) True G52361
TU65532 lncRNA downstream 1113271 14552896 ~ 14553241 (+) True G52364
AMCG00008862 mRNA upstream 3216 13387407 ~ 13431241 (+) True AMCG00008862
AMCG00008854 mRNA upstream 56755 13368598 ~ 13377702 (+) True AMCG00008854
AMCG00008855 mRNA upstream 68352 13355405 ~ 13366105 (+) True AMCG00008855
AMCG00008857 mRNA upstream 87095 13333765 ~ 13347362 (+) True AMCG00008857
AMCG00008856 mRNA upstream 125213 13306495 ~ 13309244 (+) True AMCG00008856
AMCG00008867 mRNA downstream 78038 13517663 ~ 13534601 (+) True AMCG00008867
AMCG00008868 mRNA downstream 132901 13572526 ~ 13582004 (+) True AMCG00008868
AMCG00008871 mRNA downstream 177426 13617051 ~ 13628477 (+) True AMCG00008871
AMCG00008870 mRNA downstream 189548 13629173 ~ 13638246 (+) True AMCG00008870
AMCG00008875 mRNA downstream 244943 13684568 ~ 13685905 (+) True AMCG00008875
TU65027 other upstream 125027 13306732 ~ 13309430 (+) False AMCG00008856
TU64983 other upstream 176817 13254178 ~ 13257640 (+) False G51939
TU64968 other upstream 209511 13222320 ~ 13224946 (+) True G51928
TU64845 other upstream 441965 12980804 ~ 12992492 (+) True AMCG00008837
TU64826 other upstream 507663 12925238 ~ 12926794 (+) True G51812
TU65505 other downstream 1042296 14481921 ~ 14483255 (+) True G52349
TU65523 other downstream 1088193 14527818 ~ 14540958 (+) False AMCG00008910
TU65601 other downstream 1352544 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other downstream 1352719 14792344 ~ 14794972 (+) False AMCG00008920
TU65619 other downstream 1367672 14807297 ~ 14809286 (+) False AMCG00008919

Expression Profile