RNA id: AMCG00008864


Basic Information

Item Value
RNA id AMCG00008864
length 4705
RNA type mRNA
GC content 0.49
exon number 9
gene id AMCG00008864
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13439922 ~ 13456129 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGGTCTGTCTGCCTGGCTGACGGgtggtgtgtgcgtgtgcgtgtgtgtgcggggGGTTGAGGTCTGGCTTCCTTGTCAAGATCACACTTTGGGGTTTTTTGCGTTGTTGTTGTATGTATCAATGCAAAGCGATGGGAATTGTGCAGTCATGGCTAAGAAAAAGACGGTCTTGACGCTGCTGTTTCTGTCTGGCTTGCTGGCGGTCGGCGATGggCTGAAGTGTAACTGTACCGAGTGCGAGAAGACAAACTTCCAGTGCGAGACTAATGGCGCATGCATGGCCTCCACCTCCAACATCAAAGGGCAGGAGCGGATCCCAGAGAAGCCGGGCTTCCCTGCGGGGCCGGTGTGGGGTCCTGTGGAGCTGGCTGCGGTGATCGCCGGGCCGGTGTTCCTGCTCTGCCTGGTGTTGATCGTGGGTGTGTTCCTGGTGCAGCACCACCAGCGAGTCTACAGCCACCGGCAGCGGCTCGATGTGGAGGACCCCTCCTGCGACCACCTGTACCTAGCCAAGGACAAGACCCTGCAAGACCTCATCTTTGACCTGTCCACGTCCGGCTCCGGTtccggcCTGCCCCTGTTTGTCCAGCGCACGGTGGCACGCACCATTGTGCTACAGGAGATCATCGGGAAGGGCCGGTTCGGGGAGGTGTGGCGTGGCCGCTGGCGGGGGGGAGATGTGGCAGTGAAGATCTTCTCGTCCCGCGAGGAACGCTCCTGGTTCCGCGAGGCTGAGATCTACCAGACTATCATGCTGCGGCACGAAAACATCCTGGGCTTCATCGCCGCCGACAACAAGGaTAACGGCACCTGGACACAGCTGTGGTTGGTGTCCGATTACCACGAGCATGGCTCCCTGTTTGACTACCTGAACCGCTACTCCGTCACCATCGAGGGCATGGTCAAGCTGGCCCTGTCCGCCGCCAGCGGTCTGGCACACCTGCACATGGAGATCCTGGGCACGCAGGGGAAGCCTGGCATTGCCCACCGTGACCTGAAGTCCAAGAACATCCTGGTGAAGAAGAACGGTACCTGTGCCATCGCCGACCTGGGGCTGGCTGTGCGCCACGAGTCCGTCACTGACACCATCGACATCGCCCCCAACCAGCGCGTGGGCACCAAGAGGTACATGGCCCCCGAGGTGCTGGATGAGACCATCAACATGAAGCACTTCGACTCGTTCAAGTGCGCCGACATCTACGCGCTGGGGCTGGTGTACTGGGAGATTGCCCGCCGCTGCAACGCTGGAGGGATCCACGAGGAGTACCAGCTGCCCTACTACGACCTTGTGCCCTCTGACCCCTCCATTGAGGAGATGAGGAAGGTAGTCTGTGACCAGAAGCTGCGGCCCAACGTGCCCAACTGGTGGCAGAGCTACGAGGCCCTGCGTGTGATGGGGAAGATCATGCGCGAGTGCTGGTATGCCAACGGGGCGGCGCGCCTCACCGCCTTGCGCATCAAGAAGAGCCTGTCACAGCTCAGCGTGCAGGAGGACATCAAGATCtgagcgggagagggagagagaggggcgcgGAACGCACAACGACAGTGGACGGAGGCGTGGCGGAAGACGAAGCGAGGATCGGGAGACGCGTGCCAGATGTAAAGCCACAAACTCTTCGAGCTGTGACTACCTCAATGATTTTAGCCAAAACTACTGAGTTAACCCCTTCCCCTGCCCCCCAGGCCTGCCCAGTCCCTCCTCCATCCCCTGCCCTTTCCACTGcccacttttgtttgtttgtttctctttgtaCAGTTataggttttttgttttagactttAATTTATTATCCGTCTGTCAGATCTGCTCTCCCTTAGGGCTCCCACCCACTGCTGTCACATCGTGGGGTGCAGTTGACGTATAGAGTAGGAGGTTGACCCTTAACCAGGTTAGATATGTAGTACGGTGTTGGGTTGGGGGggtaaaataattttgaatttaattttgaatttgaattcctAGTTCTGAATGTATTTTCCCTGGGTGTGAGTGCAGTCCTGCAGGGTTGCTCGTACGCAGAGATTGAGAGGGACTGTCTGAGGGCGATTCTGCTGGAATTTTATAGTTAATTCTCTTTTTGTTTGATTAAGTTGTTTGCAAACGTCCAAGTAACCGACACCTGATTTATACTGGCAGGCAAATGTCATGATgatcgtattattattattattattacccacACAACCCTGCTGAATTGAAAATGAGCAACCTTGAAACAAGACatctgtgaaatgaaaagaaaaacactaagCACAAAAACCACAATACCCCAACACTGCATTATGGACTAAATActcttctttgtgtttttgtttttttatatatgtaaaaagaatgcatgtttgtgtttcttccccccgcccccccgcatCTCCCTCCTCCAAGCActtgaaatcaaaacattgatccTCTGATCCCCCTTTcgttggttttatttatttatttatttttccccaggCAAAGTGGTTGTTTGTGGGAGATTTAACCCAGATTACAAAGAATCCCTTAATGTGGAAAACTGGAGGTTTCAAAGATAAACACACTGGTGTAAATGCTGTAAAAGTCTTGTCCCCCGTGTCTCTAGCGCTGCCCTGCTGAATGGACGAATGGTACGTTTTTACGTTGCCCTAAGGAATTGCTTATATTTTGGTTGCAATTGACCAGAGCTGTACGTCTGAATGTGAAAACGCTTCCCCCTGGTGGTGGGACTGTAGTCTTACACTCCCCCCAACTACGTTTTTTTACAGGGGACCCTGCAGAGTTGATAACTATGGTCTTGGAGTTtaccaattacttaattggtcctTAATTAGTGAATCCATTAATTAACTGAGCTGTGAACACTGAAAGACTGGATTCTCGGGGCTGAGGTCTTGAGTCAAACTGGATTTTTCTTCCCAATTTCAAATGTTTGGGACATTTCTCAACCCCTCCCCCATCCTATCCCCTTTCTTTACACACCCCTCTCTTTCGGAGGTAACTTAcccccccgcacacacacacacacacaactccctGAGTGAAAAACATTACCTCCTttatatgcaaaatgtaaataagttgtacatttctttttttgatgttgataatattaataatgtggttgttcaatatttttaatggttttttaattttcctctcTACAAAAAACTgatctgctgtattttattttgtgggtattttaatttgaatgattcattattttatatttccttttaaatctcATGAGTGACGGGGTAAACTTGAAGGTACTGTTCTTGATCTCAAAGTGTCTCTGatctaatttattatttttctcctccGTGAGGGTTTTAAAacctgctgtttttatttttaatttaatttgatcagaATTGGTACAGGTGAGTTAGTCTCCTCAGAGCAGTCTTTGTTAGGAGCAGTGATGCTCAGTCATGTCCTCTCTGCAGGAGATGTGGGAAGAGCACtagaaaaactataaataaagcaaaagcagAAGACTATGCTGGACCCATTTGGGCTGACCCTCTGCAtcacatgtacagtatttagAAAATGCATTATACTGAATAAGTacttgtatatgtatgtatgtaagtatgtgtgaatactttgttttttaatacacacatcTGTAGCTCCCACTGCAGAAGCTTGACCTGAGGGACACTGGATtctcatttttaattctgtccGTGGCAGCCAGGGGGAGGGTAGGCGTTGGGCAAGTGAGGCACACGCAAACGTGTATGTGAATGCATCTTGATTTCTGTGGAGTCGCAGAAGTAGCAGCaccctttaaaatgttaaataaatgatatgCGGACACATTAACTAGAGCGTTATGTGTACTCTAGTTTCTCTCTATTTATCAGCCAAGCCTCAGTGTAGTGTATTGGGTGCAGGTTCATCTGAGCAGTCTCTCTGTACTAAAACACAGTCGCAGTCGACATACAGGCGATGTGTTGCGGTGTCGGTGTGTGCGACTCATCAGGCTTCTGAAGAGGGGCTGTGTGAAATGGTAGCTGATCTTAATGAAACTGGGTAGGATTAGGACTGGGATTGCCACAACTGAACTACTGTTAATCCTGTTGAGAGAAAAGACATAAAAAGACCTGAAagggtaatatatatatatttttttcatccttATTATTCTGACCCTgattttacatgtgtattttttttttgttctgaggacagtgagtgtgtgtgtatatacttttcttttcccGAAACTTGCTGCTAGCGTGACTGGGTGCAGCCATCGTGGTGCGGGGATGGCACTGCTGGGTGCTCTGCTGTAATGGGCGAGGGGGAGTTTTAAAGTTTCAGAGACCCGTCATGTTTATGACAGGTGATGGCCGTGTGCGACGatgcagccctggtcctggagagacgtCCCTCTCCCTTCTCATTAGTGGCACTGTGTCCTCTTGGTGGGTTTGGAGTGACTCTGAAGGAGAGACCGCTGCCTCTGCTGGGCCAGGGTGCGGAGAGCATGGCTTAGAAAGTCTGAAACTGCTTTACACTGAAAGCGTGCTGTTCTTTTCTGTcctcctgcccccccctcccactcGCACCCCCCCACCAGCCTCTGTGTACAGCTGGAGAAAACACTGACAAACCATCTTTGACAACATAAACACTTTCAGGAACCGTTTGCAAACCTGTATATAGGTGATATacagcaattaaatacatttttttttctaatata

Function

GO:

id name namespace
GO:0001707 mesoderm formation biological_process
GO:0007493 endodermal cell fate determination biological_process
GO:0006468 protein phosphorylation biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0031101 fin regeneration biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0005024 transforming growth factor beta-activated receptor activity molecular_function

KEGG:

id description
K13567 ACVR1B, ALK4; activin receptor type-1B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65126 lncRNA downstream 296 13438088 ~ 13439626 (-) True G52041
TU65035 lncRNA downstream 130497 13307422 ~ 13309425 (-) False G51974
TU65023 lncRNA downstream 139639 13299338 ~ 13300283 (-) True G51965
TU65000 lncRNA downstream 182303 13253853 ~ 13257619 (-) True G51948
TU64999 lncRNA downstream 223927 13214272 ~ 13215995 (-) True G51947
TU65235 lncRNA upstream 315431 13771560 ~ 13776929 (-) True G52131
TU65263 lncRNA upstream 366984 13823113 ~ 13830315 (-) True G52157
TU65338 lncRNA upstream 549598 14005727 ~ 14006439 (-) True G52214
TU65362 lncRNA upstream 671110 14127239 ~ 14127501 (-) True G52233
TU65441 lncRNA upstream 815845 14271974 ~ 14275087 (-) True G52296
AMCG00008859 mRNA downstream 108920 13328969 ~ 13331002 (-) True AMCG00008859
AMCG00008860 mRNA downstream 117392 13316867 ~ 13322530 (-) True AMCG00008860
AMCG00008861 mRNA downstream 134853 13302712 ~ 13305069 (-) True AMCG00008861
AMCG00008849 mRNA downstream 165941 13268534 ~ 13273981 (-) True AMCG00008849
AMCG00008853 mRNA downstream 180864 13257698 ~ 13259058 (-) False AMCG00008853
AMCG00008865 mRNA upstream 3432 13459561 ~ 13473216 (-) True AMCG00008865
AMCG00008866 mRNA upstream 24849 13480978 ~ 13487619 (-) True AMCG00008866
AMCG00008869 mRNA upstream 81864 13537993 ~ 13540286 (-) True AMCG00008869
AMCG00008874 mRNA upstream 124287 13580416 ~ 13584831 (-) True AMCG00008874
AMCG00008873 mRNA upstream 128958 13585087 ~ 13608948 (-) True AMCG00008873
TU65044 other downstream 114695 13320274 ~ 13325227 (-) False AMCG00008860
TU65036 other downstream 130497 13307422 ~ 13309425 (-) True G51974
TU65001 other downstream 178100 13257706 ~ 13261822 (-) True AMCG00008853
TU64926 other downstream 341988 13090537 ~ 13097934 (-) True AMCG00008845
TU64897 other downstream 438034 13000826 ~ 13001888 (-) True G51867
TU65198 other upstream 229206 13685335 ~ 13686737 (-) True G52099
TU65308 other upstream 482322 13938451 ~ 13949091 (-) False G52187
TU65310 other upstream 487869 13943998 ~ 13983893 (-) True G52187
TU65929 other upstream 2029253 15485382 ~ 15505517 (-) False AMCG00008951
TU66056 other upstream 2380860 15836989 ~ 15837801 (-) True G52782

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_10638148_10656332.mRNA False 2553 mRNA 0.50 13 CI01000001 10638100 ~ 10656704 (-)