RNA id: AMCG00008866


Basic Information

Item Value
RNA id AMCG00008866
length 1988
RNA type mRNA
GC content 0.57
exon number 5
gene id AMCG00008866
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13480978 ~ 13487619 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCAGGAGGGATACGCACTTACGGGCTGCTGGAGAGGAACAATGCACTGGCAGAGAAACTgggctctttctctctctctcttaACGACCCCGATCTGGACCCGGGGGGGGGCCTGGACGATGAGTCAGCCTCAGAGGTGTCTGCTGCCAGCAACGATGTCTCCGACGACTCAGACACGGTCAGCGTGCTCTCGGACGACTCGGTATACCCTGACTATGAGGCAGAGGGCAGACCGGAGGTGGAGGGGCCCGAATTCACGCTGTACCAAGCCTGTGCCAAGAATGACGCGGCAGCCCTGGGTCGTGTGCTGCAGAGAGGGGTTGAGCCCGAGGAGGTCATGGAGATCGACATCAATGGCAGGAACGGACTGATGCTGGCATGCTACAAGGGCTTTGTGGACATCGTGTCCATCCTGGACCAATGTCCACACCTGGACGTCAATCACAAGGACAATGATGGCAACACAGCCCTGATGATCGCCTCACAGGCAGGTCACATCACCATCGTCAACTACCTCCTCAACTACTTCCCTGGCGTGGAGATGGAGGCCAGGGACACACGGGGCTTCACAGCACTCATCAAGGCAGCCATGCAGGGGCGCAATGAATGTGTGGCTGCTCTTATGATGGCCGgCGCGGAGGTGAATGCGGTGGACCTGACCCGGGGGAAGACGGCACGGGAGTGGGCTTTGCAGACGGGCCGTTCCGAGACACTGATCCAGATCCGCCGTCTCCTAGCCAAGCCACGGGCCGACCAGTTCTGCCAGGCCTATGTGCCTGAGTGGCCGGAGCTCAAGGACCTGGTGGCCAAGGCGATGGTCGCCAAGAGCCGCGGTGAGAAGTTGAGTCAGCGCCTGCGCAGCACCTTCACCTTCAACTTCCCCCGCGACCCGGAGGATGGCGGGGTGCTGGACCACATGGTGCGAATGACCACTGCCATCTCCGGCCCCTTCGTGGGCACCGCCTGCCGCCCCCTTTGTCCCACCAGCCCCCCGGAAGTGGGCAAGCGGCGGCTGGCAGTGCCCGACATCGTGAGCCAGTACCCGGGAAGGCAGGCGGAGGAGACATCGGTCAGACACAGCAACggctccatctcctcctcctcttcctcgtcctcctcctgctccacaccctcctcctcctctgagaCACGCAGGGGCAGCATGCTCTCACTGGCGTCCTCAGGGGTGCGCAGCTTCCTGCCCAGCCGCATGAGCCACAGGAACAGCGTGTTCCCGGCTGGCTGCATCCCACAGATCAAGGTGACCAAGTCCGGCGAGCCGACGCCCAAGAAGGAGAAGAAGCACAAGTCCAAGGGTGGCCACTACCTGGAGCCACCCAAGTGGAAGTACAAGGAgctgaaggaggagaagaagaaggcagagaaggagaaggaggagaaggagaaagaggacAAGAAGTGCAAATCTAAGGACaaggacaagaagaagaagaagaagaagtgaGAAAGGGGTTGTCCTACTTCCTCCTGcacatccccccaccccacatacacacacactcactcaaacacacaatcatggacacacagacacagacagaccaacacacactctcacatacacacaaactcactcccacacactctaacacactcactcatgCACTCACTCCCACTCatgcacactcactcacactcactaaCACTCCATGGCCCGTTCACTGTGGAATTGAATTGTTTTCTGTGGGTTTGGTGTTTGTATTGGGATCGTTTCCTGCGCTGCTCGAGGTGGTGTGGGGTCATGTTGTTCTGTTATCAGAAGGATGCTCTCCGTTCGGACTGGGATCTGATTGCGTGTAGGGAGAAGGCTGGGGACGTGGAGCCAAACAAACCTGTCtgtgtgatgtatttatttgttttctttctacatGGATGTTTTccgttcagaaaaaaaaaaatgttattgtgtcAGCCATTTacgtatttatttgtttataaacttGCACTTGATTCTTGCAGATGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65103 lncRNA downstream 25126 13373383 ~ 13455852 (-) True G52019
TU65126 lncRNA downstream 41352 13438088 ~ 13439626 (-) True G52041
TU65035 lncRNA downstream 171553 13307422 ~ 13309425 (-) False G51974
TU65023 lncRNA downstream 180695 13299338 ~ 13300283 (-) True G51965
TU65000 lncRNA downstream 223359 13253853 ~ 13257619 (-) True G51948
TU65235 lncRNA upstream 283941 13771560 ~ 13776929 (-) True G52131
TU65263 lncRNA upstream 335494 13823113 ~ 13830315 (-) True G52157
TU65338 lncRNA upstream 518108 14005727 ~ 14006439 (-) True G52214
TU65362 lncRNA upstream 639620 14127239 ~ 14127501 (-) True G52233
TU65441 lncRNA upstream 784355 14271974 ~ 14275087 (-) True G52296
AMCG00008865 mRNA downstream 7762 13459561 ~ 13473216 (-) True AMCG00008865
AMCG00008864 mRNA downstream 24849 13439922 ~ 13456129 (-) True AMCG00008864
AMCG00008859 mRNA downstream 149976 13328969 ~ 13331002 (-) True AMCG00008859
AMCG00008860 mRNA downstream 158448 13316867 ~ 13322530 (-) True AMCG00008860
AMCG00008861 mRNA downstream 175909 13302712 ~ 13305069 (-) True AMCG00008861
AMCG00008869 mRNA upstream 50374 13537993 ~ 13540286 (-) True AMCG00008869
AMCG00008874 mRNA upstream 92797 13580416 ~ 13584831 (-) True AMCG00008874
AMCG00008873 mRNA upstream 97468 13585087 ~ 13608948 (-) True AMCG00008873
AMCG00008872 mRNA upstream 151038 13638657 ~ 13643375 (-) True AMCG00008872
AMCG00008878 mRNA upstream 233091 13720710 ~ 13734038 (-) True AMCG00008878
TU65044 other downstream 155751 13320274 ~ 13325227 (-) False AMCG00008860
TU65036 other downstream 171553 13307422 ~ 13309425 (-) True G51974
TU65001 other downstream 219156 13257706 ~ 13261822 (-) True AMCG00008853
TU64926 other downstream 383044 13090537 ~ 13097934 (-) True AMCG00008845
TU64897 other downstream 479090 13000826 ~ 13001888 (-) True G51867
TU65198 other upstream 197716 13685335 ~ 13686737 (-) True G52099
TU65308 other upstream 450832 13938451 ~ 13949091 (-) False G52187
TU65310 other upstream 456379 13943998 ~ 13983893 (-) True G52187
TU65929 other upstream 1997763 15485382 ~ 15505517 (-) False AMCG00008951
TU66056 other upstream 2349370 15836989 ~ 15837801 (-) True G52782

Expression Profile